Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121106g00006 ATGGCACTTCTTCCCTCCTGTTCTTCTTTTTCAGCAAATACCACTCATCATCATCAATATGATGTCTTTATCAGCTTCAGAGGTGAGGATACGCGTAACGGCTTCACCAGCCATCTTCATTCTACCCTCCGCAAAAACCACATCGAGACCTTCATAGATTACAGAATCCAGAAAGGCGGTGCCATCTGGGACAAGCTTGTTGAGGCCATTAGAGACACCAAGTTGTTTCTTGTTATCTTCTCTGAAAACTATGCTTCCTCTAAGTGGTGCTTGAGAGAGCTCGTTGAGATCATGGAATGCAAGAAGAAAGAGCAGCATGTTATTGTGATTCCAGTGTTCTACAGAATAGAACCCACGCATGTTCGCAACCAGACCGGAACTTACCACGCATCATTCGCTAAGCATGAGGGATCTTCGGTGGACCGTTGCCATGTGCAGCAATGGAGGACTGCACTCACTCAAGCTGCCAATCTTTCTGGCTTCCATTGCGATCACCACCGGCAAGAAGCACAATTGATTGATGACATCGTGGAATCAATTTTTGCATATCTGGATAAGAATCCTTATAGAGATGAACTCAAAAGCCTTTTTATCAGTAACAGAAACTACACATCTGTTAAATCCTTATTGAAACCCAACAAGTTGGATAAAGTTATTGTGATTGGAATTTGGGGCATGGGCGGTATTGGCAAGACAACTATTGCTACAACTCTGTTTCATGAGTTCATCACTTCTGAATACCAAGGTTGCTTCTTATCCCTTTCAAAGGAATTAGAAGGGCAAGGTCTTAACAGCATATGCACTAAACTTTTTTCTCAATTACTAAATAAAGATCATATCTGTATCGATAATATTCGAGTAATACACTCTAGTATTATCCGTAAACTCAAGCATATGAGGATTTTCATTGTGCTTGATGATGTGACTAATTCACAAATTGCAACTGAGTTGATTCAACTGCTTCGTAATTGCCTGAGTCCCGGTAGTAGAATCATTTTGACAACTAGAGATAGAAAAGTGCTTACAAGTGGAGGAGTTGAAGAAATCTATGAAGTGAAGGAAATGAATTTTGAGGACTCCCTTAAAATTTTTAGTCATAATGCCTTTAATGATTCTCATCCTAAAGAAGGTTATTACGAGCTATCAGCAAGAGTTGTAGCAGAGTATGCCAAAGGGGTACCATTAGCATTGAAGATTTTGGGATCATTTCTGAGAAGTAAAGGAGAAAGGGAATGGGATAGTGCACTGAGAAAACTGCAAAAGTATCCCAATGCAGATGTTCAGCAAGTGTTGAGATTGAGTTATGATGCATTGGATGATGATGAGAAAAACATCCTTTTAGATGTTGCATGTTTTTTCCATGGATATAAAGTAGAAAGAGTTGTGAGAATATTAAATTCTTGTGGTTTCTTTGCAGATATAGGGATAAGAAGCCTACTAGACAAGGCTCTTATAAGTATTTATCCAAATAATGATGATGAATACATAAGAATGCATGGCTTGATACAGGAAATGTGTTGGCAAATCATTCATGAAGAATCTAGCAAAAATTGTGGACAACAAAAAAGATTGTGGGATACTGAAGAAGTCTGTAATATATTACAAGATGAAAGAGTAAGAAAATTATGTTTCAATAGCTTGGTATGGAAAATGTTTGATAGCCATAGGTAG 1671 0.3842 MALLPSCSSFSANTTHHHQYDVFISFRGEDTRNGFTSHLHSTLRKNHIETFIDYRIQKGGAIWDKLVEAIRDTKLFLVIFSENYASSKWCLRELVEIMECKKKEQHVIVIPVFYRIEPTHVRNQTGTYHASFAKHEGSSVDRCHVQQWRTALTQAANLSGFHCDHHRQEAQLIDDIVESIFAYLDKNPYRDELKSLFISNRNYTSVKSLLKPNKLDKVIVIGIWGMGGIGKTTIATTLFHEFITSEYQGCFLSLSKELEGQGLNSICTKLFSQLLNKDHICIDNIRVIHSSIIRKLKHMRIFIVLDDVTNSQIATELIQLLRNCLSPGSRIILTTRDRKVLTSGGVEEIYEVKEMNFEDSLKIFSHNAFNDSHPKEGYYELSARVVAEYAKGVPLALKILGSFLRSKGEREWDSALRKLQKYPNADVQQVLRLSYDALDDDEKNILLDVACFFHGYKVERVVRILNSCGFFADIGIRSLLDKALISIYPNNDDEYIRMHGLIQEMCWQIIHEESSKNCGQQKRLWDTEEVCNILQDERVRKLCFNSLVWKMFDSHR 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121106g00006 556 Gene3D - 14 188 IPR035897 -
Stsc121106g00006 556 SUPERFAMILY "Winged helix" DNA-binding domain 426 534 IPR036390 -
Stsc121106g00006 556 Pfam NB-ARC domain 208 436 IPR002182 GO:0043531
Stsc121106g00006 556 PRINTS Disease resistance protein signature 220 235 - -
Stsc121106g00006 556 PRINTS Disease resistance protein signature 390 404 - -
Stsc121106g00006 556 PRINTS Disease resistance protein signature 295 309 - -
Stsc121106g00006 556 SMART till_3 19 158 IPR000157 GO:0007165
Stsc121106g00006 556 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 534 IPR044974 GO:0006952
Stsc121106g00006 556 ProSiteProfiles TIR domain profile. 18 184 IPR000157 GO:0007165
Stsc121106g00006 556 Gene3D - 355 439 IPR042197 -
Stsc121106g00006 556 Pfam TIR domain 19 185 IPR000157 GO:0007165
Stsc121106g00006 556 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 161 IPR035897 -
Stsc121106g00006 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 448 IPR027417 -
Stsc121106g00006 556 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 186 - -
Stsc121106g00006 556 Gene3D - 189 346 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121106g00006 Stsc-Chr121106 21550 23948 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121106g00006 20 530 WRKY Transcription Factor Family AT4G12020 29.333 5.19e-55 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121106g00006 - - aip:107614877 811.216