Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121105g00001 ATGAGAGAGGGCTTAAGATCTCAGACTCGATTGCTGAATGTTTGTGCTGATAGTGGTGGTGATGTAAAGAGTGTTTCTTTTGATTTGGGTGGTGAAGATTCAAAGGTTGTTGGGGAGGTGTTAGGGTCTCTGGTTGAGGAGAAGGTGGATAATGTTGCTGAAAGAGCTATGAAGGAAGAATGTGATGCTGATTTGGGTGCTAGTACTAGTGGAAAAGGGGATGCTGACTCAGCTGAGGATGGGGGCAATGGGTGCGGTGAAGATGATGGTGTTGAGAAGAAGATGGTAGTGAGTGAGGTAGGGGGGTTGAATGGGACGGTAACGATAGGTGGTCGAGTGCTGCGTTCCAGGACGAAGAGGCTAGAAAATGAAAAACCTTGCAGTGGAGGGAGTGGTGGTGATGTAGTTGTTTCAGGGAGAGGTGGCGGGCGTGGTGGTTTTAGGAGGGTAACGGTCAAGAAGGAGTGTCAAGGTGATGATGAATATATTCCTAATGGTTGCGGGAATGTGGGGGTTGGTCTGAAGAAGAAGAAAGGGAAGCGCGGGAGGCCTCGGAAAGTGAGGTTGGAAGAATCAGATGAGTTAGCTTTGGTGAGTTGCGGGAATGAGGAGGTTGAGCTGAAGAAGAATGTGAATGGTGGAACGAAGAAGCGGAAGCGTGGGAGGCCTCCTAAATTGAAGTTGGAAGAACCAGATAAGCTAGTTGAGCAGTCTCCAAGGAAGAGGGGTAGACCCCCCAAGGATCATGGACAAAACCATCTTGCAGTAGTGGTGTATGAGCATGATAGAAAAGTCAATGTGAGCCATCAAAAAGGTAAAAAAGGTTTAACTGCAACGGTTGATGCAAAAGCAAATGTGATTGCTTGTTTGAGCTCAAGGAGATCTTCTCAGAGAGTGCTAGAAAAGAAGGGAGTGAAGGTTTTGGAAACCGAGGGCGATGGGGTTTGTGAGGGAATAAGTGGAGAAATAATGGAAGAAAGAAAGAAAAAACAAGGAAAGGATGGAAGGAAGGAAGAAAAGAGGAAGGAAGGAAGGAGGGAAGAAAAGCAGTTAGTGAGGGAAAAGATTATGGAACAAATTTTAGCTGCGGGCTGGACAGTTGACTATAGACCTAGGAATGGAAGGGAATACATGGATGCTGTGTATGTTAGTCTAGATGGTAAGACACACTGGTCTATCACCTTGGCTTACAATAGGCTTAAAAAGCATTATGAAGCTGGTGATGGTGAAGGGAAGGTATATGGGTCAGGTTTCAAATTTACACCAATATCTGAAGAGGATTTCCAAATGCTGACCAAGGTAATAACAAAGGAAAGAGCAAGTAAAAAGAAAAGGATGAAAAATGGGGTAAAGGGTAAAAAGTTGAAGAAAGGGAAAGCAGCTTCTCATGCAGGCATGGGTAAATCTGTGAAGCGGAAAATGAAAAGGAAACCGAGAGAGGAGGATGACACAGATGATATGTTGCCCAATAATCTGGGCAGGGATCATAAGCGACATAAAACACAAAGTAAGAAACGAGGTGCTCCGTTAGTTCGCAATGCTGAGCTTGATATGGATTCAGAAGCTGATGGATATGTACCATACTGCGGAAAACGAACTGTACTTGCATGGATGATAGATTTGGGAACAATTCTGCAAGATGTTAAGGTTCATTATATGCAACTCAGAGAGAACAGTGTGCTGCTGGATGGTAAGATCACAGGAGATGGCATTCTTTGTGGCTGCTGTAATGAAGTCATAACGATTTCAGATTTTGAAGCTCATGCAGGAATCAAATACTCAGATCCACTTAAAAATATACATATAGAGGGAGGAACTTCCCTTTTGCAATGCCTATTAGATTCATGGAATAAAGAGGATGAGTCTGAACGTAAAGGTTTTCATTTTGTTGATGTTGCTGGCGAGGATCCAAATGATGACACATGTGGTGTCTGTGGAGATGGAGGAGACCTGATCTGCTGTGATGGTTGCCCATCGACATTCCACCAAAGTTGCTTGGATATAAATAAGTTCCCATCTGGTGACTGGCACTGTGTATATTGTTGTTGCAAATTTTGTGGTTTGGTTGGTGGAAGTTCAAATCAGACAGATGACAATGATGGTTCTGCTATGTCAACCTTACTCACATGCCATTTGTGTGAAGAAAAATACCACGGAGACTGTGCTGAGGAAAATGGTGCCAAGCATGATGATACCAGAGATGCCTCCTTTTGTGGAAACAGATGTCAAGAGTTGTCAGAGAGGCTTGAAATGCTTCTTGGGGTTAAGCATGAAATTGAAGATGGATTTTCTGTGACTTTGATTCGGAGATCAGATGTTGCCTTTGATGTTTCTCAGACAAAACCTGAGATAGTTGAATGTAATTCCAAGCTGGCTGTTGCATTATCAGTAATGAATGAGTGCTTCATGCCATACATTGATGAGAGAAGTGGGATTGATCTGATCCATAGCATTCTATATAACTGCGGGTCAAACTTCAAACGGCTGAACTACAGTGGATTTGTTACTGCAATTCTAGAGCGAGGGGATGAAATCATTGCTGCTGCAACTATCAGGATTCATGGGAATCAACTAGCAGAGATGCCATTTATTGGGACCCGGTTTTTGTATAGGCGACAAGGGATGTGCCGGCGGCTTCTAAATGGCATTGAATGTGTACTTAGCTCTTTGAATGTTGAGTTATTGGTCATACCAGCTGTCTCAGAAGTGAGAGAAACTTGGACTTCTGCTTTTGGTTTTGAGCCACTTGAATTGGAAAACAAGAAAATAATAAAGAGCATGAGTCTGTTGGTATTCCCTCACGTAGATATGTTGCAGAAGAAGATATCAAAGCATAAGTTTGCCGAGGAAACTGTGATTACTACAGAAGCTTCCTTTCTTCTGCTGAAAGATCATGCAGAAGGCGAGGTGGCAAATAATTGTGCAGGGGCAGAATCATTAGTGTCTGATTCAATGAACAATTCTGCTGACATCCCTTCTAATGATGGCCAGATAAAGGATAAAACCATGCTTACTGAATCTGGCAGTGTTCTTCCTGAGGGTTCGTTGAATAATGGCGACACTAAACTTCATGATAAATGTCCAGAAGATATCACATGCCAAGTTGGTTGCCATGAAAATTTGCCAGTGGAAGACAAAAACCTTGCAAATCCCTCTGATGAAGGAAATGAAGACATCAGTACACATAAGAATACTAGTCATGATTGTGTCGAGATGATCGATGATGGGAAGCCAGTGGATTTAGATGGTCAATCGAACAACTGCTGTGATACCTATGAGGAAACAGAATGTCCTAGAGATGGTTGTCCCTCTGGTGAAGCAGTTCCTACAACCAATGACTCGGTGCACCTTAAGTCCAAGGACATCACTGAAGATTGTCCTGATAATTGTGAAACAAACTCCAAAATGGTTAGCACCCGAAGTCCAGATGAAGCTGAGAAACACCCGGCCGAAACACCTAAGCTCCAGACAGATGCAGAAGCCCAATCCTTACCTGTGTCTTCTGATCTATGTGAGAAGATTATGGATTGTGCTGATGAGAATAGTAAGCCATCCTCAGTTGGTGATGCTGATTCCCTTCCCGCCAATACCAACAGAAATCCAAACAAGGAACACCTGACACTGCAGGTCGATCAAAATCCGCGAACCCTATGTACACCAAACACTGCTTCTAGTGTAGCGCTTAACTGTGCATCTGTGGGTGCTAGCAGTGCTTCTTGCAGTAGTACTGAGGTGATGGTTCTGTCAAACCAAGCCAGCTGA 3762 0.4354 MREGLRSQTRLLNVCADSGGDVKSVSFDLGGEDSKVVGEVLGSLVEEKVDNVAERAMKEECDADLGASTSGKGDADSAEDGGNGCGEDDGVEKKMVVSEVGGLNGTVTIGGRVLRSRTKRLENEKPCSGGSGGDVVVSGRGGGRGGFRRVTVKKECQGDDEYIPNGCGNVGVGLKKKKGKRGRPRKVRLEESDELALVSCGNEEVELKKNVNGGTKKRKRGRPPKLKLEEPDKLVEQSPRKRGRPPKDHGQNHLAVVVYEHDRKVNVSHQKGKKGLTATVDAKANVIACLSSRRSSQRVLEKKGVKVLETEGDGVCEGISGEIMEERKKKQGKDGRKEEKRKEGRREEKQLVREKIMEQILAAGWTVDYRPRNGREYMDAVYVSLDGKTHWSITLAYNRLKKHYEAGDGEGKVYGSGFKFTPISEEDFQMLTKVITKERASKKKRMKNGVKGKKLKKGKAASHAGMGKSVKRKMKRKPREEDDTDDMLPNNLGRDHKRHKTQSKKRGAPLVRNAELDMDSEADGYVPYCGKRTVLAWMIDLGTILQDVKVHYMQLRENSVLLDGKITGDGILCGCCNEVITISDFEAHAGIKYSDPLKNIHIEGGTSLLQCLLDSWNKEDESERKGFHFVDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHQSCLDINKFPSGDWHCVYCCCKFCGLVGGSSNQTDDNDGSAMSTLLTCHLCEEKYHGDCAEENGAKHDDTRDASFCGNRCQELSERLEMLLGVKHEIEDGFSVTLIRRSDVAFDVSQTKPEIVECNSKLAVALSVMNECFMPYIDERSGIDLIHSILYNCGSNFKRLNYSGFVTAILERGDEIIAAATIRIHGNQLAEMPFIGTRFLYRRQGMCRRLLNGIECVLSSLNVELLVIPAVSEVRETWTSAFGFEPLELENKKIIKSMSLLVFPHVDMLQKKISKHKFAEETVITTEASFLLLKDHAEGEVANNCAGAESLVSDSMNNSADIPSNDGQIKDKTMLTESGSVLPEGSLNNGDTKLHDKCPEDITCQVGCHENLPVEDKNLANPSDEGNEDISTHKNTSHDCVEMIDDGKPVDLDGQSNNCCDTYEETECPRDGCPSGEAVPTTNDSVHLKSKDITEDCPDNCETNSKMVSTRSPDEAEKHPAETPKLQTDAEAQSLPVSSDLCEKIMDCADENSKPSSVGDADSLPANTNRNPNKEHLTLQVDQNPRTLCTPNTASSVALNCASVGASSASCSSTEVMVLSNQAS 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121105g00001 1253 PRINTS AT-hook-like domain signature 215 226 IPR017956 GO:0003677
Stsc121105g00001 1253 PRINTS AT-hook-like domain signature 178 188 IPR017956 GO:0003677
Stsc121105g00001 1253 PRINTS AT-hook-like domain signature 237 247 IPR017956 GO:0003677
Stsc121105g00001 1253 MobiDBLite consensus disorder prediction 475 496 - -
Stsc121105g00001 1253 PANTHER PHD FINGER PROTEIN 12 292 1128 IPR042163 GO:0003714|GO:0045892
Stsc121105g00001 1253 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 782 942 IPR000182 GO:0016747
Stsc121105g00001 1253 MobiDBLite consensus disorder prediction 326 349 - -
Stsc121105g00001 1253 MobiDBLite consensus disorder prediction 1180 1202 - -
Stsc121105g00001 1253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 631 741 IPR013083 -
Stsc121105g00001 1253 MobiDBLite consensus disorder prediction 1050 1065 - -
Stsc121105g00001 1253 MobiDBLite consensus disorder prediction 1185 1202 - -
Stsc121105g00001 1253 MobiDBLite consensus disorder prediction 1140 1154 - -
Stsc121105g00001 1253 MobiDBLite consensus disorder prediction 1044 1065 - -
Stsc121105g00001 1253 SMART AT_hook_2 178 190 IPR017956 GO:0003677
Stsc121105g00001 1253 SMART AT_hook_2 217 229 IPR017956 GO:0003677
Stsc121105g00001 1253 SMART AT_hook_2 239 251 IPR017956 GO:0003677
Stsc121105g00001 1253 MobiDBLite consensus disorder prediction 224 252 - -
Stsc121105g00001 1253 MobiDBLite consensus disorder prediction 439 508 - -
Stsc121105g00001 1253 MobiDBLite consensus disorder prediction 59 90 - -
Stsc121105g00001 1253 MobiDBLite consensus disorder prediction 1121 1162 - -
Stsc121105g00001 1253 SMART PHD_3 683 743 IPR001965 -
Stsc121105g00001 1253 SMART PHD_3 641 682 IPR001965 -
Stsc121105g00001 1253 MobiDBLite consensus disorder prediction 439 474 - -
Stsc121105g00001 1253 ProSiteProfiles Zinc finger PHD-type profile. 639 684 IPR019787 -
Stsc121105g00001 1253 SUPERFAMILY FYVE/PHD zinc finger 634 687 IPR011011 -
Stsc121105g00001 1253 MobiDBLite consensus disorder prediction 211 252 - -
Stsc121105g00001 1253 CDD PHD1_AIRE 642 681 - -
Stsc121105g00001 1253 Pfam Tify domain binding domain 564 613 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121105g00001 Stsc-Chr121105 5477 11701 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121105g00001 178 961 PHD Transcription Factor Family AT5G36670 42.144 0.0 611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121105g00001 - - lang:109346644 1164.06