Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121104g00010 ATGATTCAACCTCAAACCCATTTGAATGTAGCCGATAACAGCGGAGCCCGCCAATTGATGTGTATTCGAATCATAGGAGCTGGTAATCGACGATATGCTTCTATTGGTGACATTGTTGTTGCTGTAATCAAGAAAGCGGTGCCAAATATGTCTTTAGAAAGATCAGAAGTGATTAGAGCTGTAATTGTACGTACTCGTAAAGAACTTAAACGCAGCAATGGCATGATAATACAGTATGATGATAATGTCGCGGTTGTCATTGATCAAGAGGGAAATCTAAAAGGAACTCTAATCTTTGGCGCAATCGCCCGGGAATTGAGACAGTTAAATTTCACTAAAATAACCTCATTAGCACCACTGAGTAGAAGACATGCTGAAGTAAAGAAACTTGGACCCTCTTGTCCCGGGTTCGAATCATTCCCAAGGTAA 429 0.4079 MIQPQTHLNVADNSGARQLMCIRIIGAGNRRYASIGDIVVAVIKKAVPNMSLERSEVIRAVIVRTRKELKRSNGMIIQYDDNVAVVIDQEGNLKGTLIFGAIARELRQLNFTKITSLAPLSRRHAEVKKLGPSCPGFESFPR 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121104g00010 142 SMART Ribosomal_L14_2 1 120 IPR000218 GO:0003735|GO:0005840|GO:0006412
Stsc121104g00010 142 Pfam Ribosomal protein L14p/L23e 1 119 IPR000218 GO:0003735|GO:0005840|GO:0006412
Stsc121104g00010 142 Gene3D Ribosomal protein L14 1 120 IPR036853 GO:0003735|GO:0005840|GO:0006412
Stsc121104g00010 142 NCBIfam 50S ribosomal protein L14 1 119 IPR005745 GO:0003735|GO:0006412|GO:0015934
Stsc121104g00010 142 Hamap 50S ribosomal protein L14 [rplN]. 1 122 IPR000218 GO:0003735|GO:0005840|GO:0006412
Stsc121104g00010 142 SUPERFAMILY Ribosomal protein L14 1 119 IPR036853 GO:0003735|GO:0005840|GO:0006412
Stsc121104g00010 142 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 119 IPR000218 GO:0003735|GO:0005840|GO:0006412
Stsc121104g00010 142 FunFam 50S ribosomal protein L14, chloroplastic 1 121 - -
Stsc121104g00010 142 ProSitePatterns Ribosomal protein L14 signature. 60 86 IPR019972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121104g00010 Stsc-Chr121104 59605 60886 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121104g00010 8 118 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 37.391 6.33e-20 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121104g00010 K02874 - csin:14412462 205.682