Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121104g00009 ATGGACTCCGACGACGACATCCACCGCCTCTTATCGGAGCAACGCCGCGAGCTCGCCGCCGCGGAGGCCCTCGACTCCGACCTCGAATTCGCATACCGCCTACAACTTGAGGAAGCACTCGCCGCCTCCCTTGCTTCCCTCCCCTCCTCTTCCTCCCCTCAACCACCACCACCACTTCCAACCTACGATGACAAAAGCGACGTCGATTTGAACGCCACGACGCTCCAGGCACAAGAACTCGCGAGGGTTCAGCAAGAACTCCAGGACCACCACCTCAGCGAGGCGGAGGCCCGCAAAACGAGACTCGATCTCAACCGTCGCGTCCATGATCAGAAAGTCGCCATCGAAATCCTTAGAATCTGCGAAGACGATTGGGTCGAATGGGGCGATAATTTCGAGAAACCCTTCTTCGGAGAAGGTTCTTCTTCTAATGGTAAGGGCAATTTGGGAATTGACGACGAGGACGAAGACGAAGACGATGAAGATGCGGTTTTTAGGGTTTACTTTAAGGGTTTGGTGAGCAATGACGAGAAGTGGAAGAACGGAGAGAAGGTTGTGTTGGCTGGGATTGGGGTTGCTATTTGTGACCCTAAAGATAACTTGATTCTTGAAGTTCGAAAGCCACTCGTTGGGTGTGGAACGAGCAAGATTGTTGCTGATCTTAAGGCTTCCATTGAAGGATTGAATGCTGCGTTGTCTTTGGACTTGAAGCGTGTTCACTTCTTCTGCGATTACTATCCAATGTTCCAATTCGTTAGGGGAAAATGGCCTGTGAAACAGCGGAAGGTTGCTGTGCTAGTCAATCAAGTGAATATGCTACGAAGAAAATTTACTTATTGTGCTCCAATGCTTCTGGCAAGACATGATGTCAAGTATGCATTTAAGCTTGCAAGAGATGCAATTGATTCTCAATTGACGGCGCCTGCGGACTCTAGCAGTGTGAAGAATCTGAATGAAACTTGTGTCATATGTTTGGAGGATACTGATGGCAATAACTTTTTTTCGGTTGATGGCTGTCAACATCGGTATTGCTTTTCTTGCATGAGACAACATGTGGAGGTGAAGTTGCTTCATGGGATGGTGCCAAAATGCCCTCATGAAGGATGCAATTCTGAGCTTCAAGTTGACAGCTGCAAGAAATTTTTGACAAATAAATTAATTGAGACCATGCAACTGCGAAAGTTGGAAGCTTCAATTCCAGTTACTGAGAAAATTTATTGTCCTTATCCACGATGCTCTGCATTGATGTCAAAAACCGAGCTTTTTGAATACTCCAAAAATCTTATTGGTGATTCTGAACAATCAGGACCCAAGAAATGTATAAAATGCCATGGTCTCTTCTGTTTCAGTTGCAAGGTCCCTTGGCATAGTGGCATGAAATGCTATGATTACAAAAGGTTGAATCCTAACCCTCCTGCTGAAGATTTGAAGCTGAAGTTTCTGGCATCAAGGAGTCTATGGCGCCAGTGTGTGAAATGTAACCATATGATTGAACTTGCTGAAGGCTGCTATCACATGACTTGCAGATGTGGCTACGAATTCTGTTATAACTGTGGAGCCGAATGGAAGAACAAGAAAGCGACGTGTTCTTGCCCCCTTTGGGCTGAAGACAACATTTGGTATGAGGATCATGCGAGGGACTCGGACGAAGAAGAGGAAGAAGATGACGACGATGTTGAATTTTATGATTCTGATTATTCAGATGAATTTTACTGA 1716 0.4604 MDSDDDIHRLLSEQRRELAAAEALDSDLEFAYRLQLEEALAASLASLPSSSSPQPPPPLPTYDDKSDVDLNATTLQAQELARVQQELQDHHLSEAEARKTRLDLNRRVHDQKVAIEILRICEDDWVEWGDNFEKPFFGEGSSSNGKGNLGIDDEDEDEDDEDAVFRVYFKGLVSNDEKWKNGEKVVLAGIGVAICDPKDNLILEVRKPLVGCGTSKIVADLKASIEGLNAALSLDLKRVHFFCDYYPMFQFVRGKWPVKQRKVAVLVNQVNMLRRKFTYCAPMLLARHDVKYAFKLARDAIDSQLTAPADSSSVKNLNETCVICLEDTDGNNFFSVDGCQHRYCFSCMRQHVEVKLLHGMVPKCPHEGCNSELQVDSCKKFLTNKLIETMQLRKLEASIPVTEKIYCPYPRCSALMSKTELFEYSKNLIGDSEQSGPKKCIKCHGLFCFSCKVPWHSGMKCYDYKRLNPNPPAEDLKLKFLASRSLWRQCVKCNHMIELAEGCYHMTCRCGYEFCYNCGAEWKNKKATCSCPLWAEDNIWYEDHARDSDEEEEEDDDDVEFYDSDYSDEFY 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121104g00009 571 ProSiteProfiles Zinc finger RING-type profile. 321 365 IPR001841 -
Stsc121104g00009 571 MobiDBLite consensus disorder prediction 546 571 - -
Stsc121104g00009 571 FunFam RBR-type E3 ubiquitin transferase 459 570 - -
Stsc121104g00009 571 MobiDBLite consensus disorder prediction 44 67 - -
Stsc121104g00009 571 SMART ibrneu5 388 461 IPR002867 GO:0008270
Stsc121104g00009 571 SMART ibrneu5 474 531 IPR002867 GO:0008270
Stsc121104g00009 571 SUPERFAMILY RING/U-box 319 400 - -
Stsc121104g00009 571 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 403 IPR013083 -
Stsc121104g00009 571 ProSiteProfiles TRIAD supradomain profile. 317 541 IPR044066 -
Stsc121104g00009 571 FunFam RBR-type E3 ubiquitin transferase 165 304 - -
Stsc121104g00009 571 CDD BRcat_RBR_unk 401 464 - -
Stsc121104g00009 571 Gene3D - 459 569 - -
Stsc121104g00009 571 Pfam IBR domain, a half RING-finger domain 480 529 IPR002867 GO:0008270
Stsc121104g00009 571 Pfam IBR domain, a half RING-finger domain 403 461 IPR002867 GO:0008270
Stsc121104g00009 571 Gene3D - 165 309 IPR036397 GO:0003676
Stsc121104g00009 571 ProSitePatterns Zinc finger RING-type signature. 339 348 IPR017907 -
Stsc121104g00009 571 SUPERFAMILY RING/U-box 475 538 - -
Stsc121104g00009 571 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 258 538 IPR031127 GO:0004842|GO:0016567
Stsc121104g00009 571 CDD Rcat_RBR_unk 487 522 - -
Stsc121104g00009 571 MobiDBLite consensus disorder prediction 137 157 - -
Stsc121104g00009 571 FunFam RBR-type E3 ubiquitin transferase 316 401 - -
Stsc121104g00009 571 Pfam Reverse transcriptase-like 187 300 IPR002156 GO:0003676|GO:0004523
Stsc121104g00009 571 MobiDBLite consensus disorder prediction 545 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121104g00009 Stsc-Chr121104 54752 57898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121104g00009 164 520 C3H Transcription Factor Family AT2G19610 33.702 7.94e-62 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121104g00009 - - ahf:112736554 991.49