Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121103g00010 ATGTCATTCACGGGGACTCTTGATAAATGCGCTGCTTGTGATAAGACTGTTTATGTCGTTGATTTGTTAACTCTTGAAGGCGTACCTTACCATAAAAATTGCTTCAAATGCAGTCACTGCAAGGGAACTCTCACGATGAGCACATACTCCTCAATGGATGGAGTCCTCTATTGCAGGCCCCATTTTGAACAGCTCTTCAAGGAATCTGGCAACTTCAGCAAGAACTTCCAGAATGCAAAGCCTTCTGAGAAAACTGACCTGAACAGGACCCCAAGTAGACTCTCTTCCATGTTCAGTGGAACCTTGGACAAATGTTCGGTTTGCTCAAAAACAGTGTATCCACTGGAGAAGGTGACACTGGAGGGAGAATGCTTTCACAAGAGTTGCTTTAGGTGTGCTCATGCAGGGTGCCCTCTCACACATTCTTCCTATGCTGCCCTAGATGGTGTCCTCTATTGTAGGCACCACTTTGCACAACTCTTCATGGAGAAAGGCAACTACAGCCATGTCCTCCAGGCTGCTGCCCACAAGAGGACTAATTCCTCTGAACCTCCTGAGATTGCCGACGACACCGCGCAGCAGCCGGCGGACCCAGAGCCCGAGCCTGAAGCCGACAAGGAAGACAACAAGCCGGAGGATGAAACCGAGGCAGCCGAGGAGAACAAAGAAAAAGAAGATGAGCCTTCCTCTTCTTGA 696 0.4899 MSFTGTLDKCAACDKTVYVVDLLTLEGVPYHKNCFKCSHCKGTLTMSTYSSMDGVLYCRPHFEQLFKESGNFSKNFQNAKPSEKTDLNRTPSRLSSMFSGTLDKCSVCSKTVYPLEKVTLEGECFHKSCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYSHVLQAAAHKRTNSSEPPEIADDTAQQPADPEPEPEADKEDNKPEDETEAAEENKEKEDEPSSS 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121103g00010 231 SMART lim_4 9 61 IPR001781 -
Stsc121103g00010 231 SMART lim_4 104 156 IPR001781 -
Stsc121103g00010 231 FunFam LIM domain and actin-binding 1 99 169 - -
Stsc121103g00010 231 Gene3D Cysteine Rich Protein 5 72 - -
Stsc121103g00010 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 170 - -
Stsc121103g00010 231 FunFam LIM domain and actin-binding 1 4 74 - -
Stsc121103g00010 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Stsc121103g00010 231 MobiDBLite consensus disorder prediction 206 221 - -
Stsc121103g00010 231 MobiDBLite consensus disorder prediction 174 231 - -
Stsc121103g00010 231 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Stsc121103g00010 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Stsc121103g00010 231 ProSiteProfiles LIM domain profile. 103 163 IPR001781 -
Stsc121103g00010 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 97 130 - -
Stsc121103g00010 231 CDD LIM1_SF3 6 68 - -
Stsc121103g00010 231 Gene3D Cysteine Rich Protein 101 169 - -
Stsc121103g00010 231 PANTHER OS06G0237300 PROTEIN 6 87 - -
Stsc121103g00010 231 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Stsc121103g00010 231 CDD LIM2_SF3 105 165 - -
Stsc121103g00010 231 Pfam LIM domain 105 160 IPR001781 -
Stsc121103g00010 231 Pfam LIM domain 10 65 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121103g00010 Stsc-Chr121103 54579 55767 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Stsc121103g00010 LIM 1.8e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121103g00010 - K09377 gmx:100800234 352.443