Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121103g00006 ATGCATGGTTTATTTCATATTCTTTGTGACTGTATGCCTAGTGGTCAAACTTGGCAGGCATACATGAAATGCTGCTACTACCCTCTTAACCGATGTCGAAAAGCTGAGCAAATGGAAGAGGATAGAAGGAATGCTGATAATCCTTGCAACTCGAACTGTCTAAGTGGCTTAGGTCAGCCATCAACTGCAAGTATCATGATTGATAATACTGCACCTAACATAGTATACAGGAGAAAAAAGCTACGGAAGCGGTTAAATGCTCCGCCTTCCAATTGCCAGTCAGTCATAAGTTCCTCTGTGCATTTATCATCAGCTGAGGATAGGCCAGGTGGTTTCCAAGTTAATGACGATTCTGAAATGATTAGAAATCTTGCTCTTTCTNNNNNNNNNNGGGTAGCTAAAGATAACATTCAGAAAAGTTTAGGAATTGAAAGTGTAAATGATAGTTGCTCCTCTTCAAAATCAAATATGGAACTTGATTCAGATTCGGTAGAAACCGAAATTGATGAACCTTGTGAATGCTCCTCATCCAGTGCAATAGTTATGGATGTTACAAGGGAAGAAAAGACAGAAAAGGATTTCTGCATCAATATTCTAAGAAGCTATGGACTCATTCGAGGAGATTCTTTTGCAAATAATGTTGCTTGTTTGGAAAACGTTGTCACCGCTGGTAATATCTGCTGTTCCAGGTCATGCAAAACATGTGTTAGGTTGGACAGTTCATTGAACATGCTTTTATGTGATCATTGCGAAGATGCATATCATCCAACTTGCTACAACCCACGTTTGAAAAAATTACCAATCGATGAATGGTTTTGCCATTCATGTCTCAGAAAAAGGCAGAAAGTTCTCAAAGAGACAATCATCAAATCACCAGGTATCCACAATGAACTGGGAAAATGTAGAACTGCTTCAGTTAAGGTAGAATCGAATCCAATAATGTTGATGTTGAGAGACACAGAGCCATATGCAACCAATGTGCGGGTTGGTAAAGGTTTTCAAGCTGAAGTACTTGGTTGGTTAGGTCCTCAAGGAAGTGATGAAGATGAACTTCCTGAATTGTTTGAAATAAATCATGCGGAGTTTCCAAGACTGCAGGAAGAGAATAGAAGAAATCCAACTAGACTCAGTTCCATAGGTAATTGGCTTCAGTGTCAGGAGATTATAAATAGAGCCAATGGAACCGTGTGTGGAAAATGGCGTAGGTAA 1209 0.3921 MHGLFHILCDCMPSGQTWQAYMKCCYYPLNRCRKAEQMEEDRRNADNPCNSNCLSGLGQPSTASIMIDNTAPNIVYRRKKLRKRLNAPPSNCQSVISSSVHLSSAEDRPGGFQVNDDSEMIRNLALSXXXXVAKDNIQKSLGIESVNDSCSSSKSNMELDSDSVETEIDEPCECSSSSAIVMDVTREEKTEKDFCINILRSYGLIRGDSFANNVACLENVVTAGNICCSRSCKTCVRLDSSLNMLLCDHCEDAYHPTCYNPRLKKLPIDEWFCHSCLRKRQKVLKETIIKSPGIHNELGKCRTASVKVESNPIMLMLRDTEPYATNVRVGKGFQAEVLGWLGPQGSDEDELPELFEINHAEFPRLQEENRRNPTRLSSIGNWLQCQEIINRANGTVCGKWRR 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121103g00006 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 296 IPR013083 -
Stsc121103g00006 402 Pfam PHD-finger 232 278 IPR019787 -
Stsc121103g00006 402 SMART PHD_3 231 277 IPR001965 -
Stsc121103g00006 402 ProSitePatterns Zinc finger PHD-type signature. 232 276 IPR019786 -
Stsc121103g00006 402 SUPERFAMILY FYVE/PHD zinc finger 230 283 IPR011011 -
Stsc121103g00006 402 FunFam RING/FYVE/PHD zinc finger superfamily protein 221 297 - -
Stsc121103g00006 402 ProSiteProfiles Zinc finger PHD-type profile. 229 279 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121103g00006 Stsc-Chr121103 23199 26379 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc121103g00006 PHD 3.5e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121103g00006 - - gmx:100800660 529.25