Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121103g00005 ATGAAATGCTGCTACTACCCTCTTAACCGATGTCGAAAAGCTGAGCAAATGGAAGAGGATAGAAGGAATGCTGATAATCCTTGCAACTCGAACTGTCTAAGTGGCTTAGGTCAGCCATCAACTGCAAGTATCATGATTGATAATACTGCACCTAACATAGTATACAGGAGAAAAAAGCTACGGAAGCGGTTAAATGCTCCGCCTTCCAATTGCCAGTCAGTCATAAGTTCCTCTGTGCATTTATCATCAGCTGAGGATAGGCCAGGTGGTTTCCAAGTTAATGACGATTCTGAAATGATTAGAAATCTTGCTCTTTCTNNNNNNNNNNGGGTAGCTAAAGATAACATTCAGAAAAGTTTAGGAATTGAAAGTGTAAATGATAGTTGCTCCTCTTCAAAATCAAATATGGAACTTGATTCAGATTCGGTAGAAACCGAAATTGATGAACCTTGTGAATGCTCCTCATCCAGTGCAATAGTTATGGATGTTACAAGGGAAGAAAAGACAGAAAAGGATTTCTGCATCAATATTCTAAGAAGCTATGGACTCATTCGAGGAGATTCTTTTGCAAATAATGTTGCTTGTTTGGAAAACGTTGTCACCGCTGGTAATATCTGCTGTTCCAGGTCATGCAAAACATGTGTTAGGTTGGACAGTTCATTGAACATGCTTTTATGTGATCATTGCGAAGATGCATATCATCCAACTTGCTACAACCCACGTTTGAAAAAATTACCAATCGATGAATGGTTTTGCCATTCATGTCTCAGAAAAAGGCAGAAAGTTCTCAAAGAGACAATCATCAAATCACCAGGTATCCACAATGAACTGGGAAAATGTAGAACTGCTTCAGTTAAGGTAGAATCGAATCCAATAATGTTGATGTTGAGAGACACAGAGCCATATGCAACCAATGTGCGGGTTGGTAAAGGTTTTCAAGCTGAAGTACTTGGTTGGTTAGGTCCTCAAGGAAGTGATGAAGATGAACTTCCTGAATTGTTTGAAATAAATCATGCGGAGTTTCCAAGACTGCAGGAAGAGAATAGAAGAAATCCAACTAGACTCAGTTCCATAGGTAATTGGCTTCAGTGTCAGGAGATTATAAATAGAGCCAATGGAACCGTGTGTGGAAAATGGCGTAGAGCTCCACTTTTTGAAGTTCAAACTGATGACTGGGAGTGCTTCTGTGCTATCCATTGGGATCCATATCACGCTGATTGTGCTGTACCTCAGGAGCTCGAAACAGATCAAGTTCTAAAGCATCTTAAGTATATAGAAATGGTATGTTTAAACTTTAAACTGTAA 1305 0.3916 MKCCYYPLNRCRKAEQMEEDRRNADNPCNSNCLSGLGQPSTASIMIDNTAPNIVYRRKKLRKRLNAPPSNCQSVISSSVHLSSAEDRPGGFQVNDDSEMIRNLALSXXXXVAKDNIQKSLGIESVNDSCSSSKSNMELDSDSVETEIDEPCECSSSSAIVMDVTREEKTEKDFCINILRSYGLIRGDSFANNVACLENVVTAGNICCSRSCKTCVRLDSSLNMLLCDHCEDAYHPTCYNPRLKKLPIDEWFCHSCLRKRQKVLKETIIKSPGIHNELGKCRTASVKVESNPIMLMLRDTEPYATNVRVGKGFQAEVLGWLGPQGSDEDELPELFEINHAEFPRLQEENRRNPTRLSSIGNWLQCQEIINRANGTVCGKWRRAPLFEVQTDDWECFCAIHWDPYHADCAVPQELETDQVLKHLKYIEMVCLNFKL 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121103g00005 434 SUPERFAMILY FYVE/PHD zinc finger 209 262 IPR011011 -
Stsc121103g00005 434 ProSiteProfiles Zinc finger PHD-type profile. 208 258 IPR019787 -
Stsc121103g00005 434 ProSiteProfiles Zinc finger CW-type profile. 355 415 IPR011124 GO:0008270
Stsc121103g00005 434 ProSitePatterns Zinc finger PHD-type signature. 211 255 IPR019786 -
Stsc121103g00005 434 FunFam RING/FYVE/PHD zinc finger superfamily protein 200 276 - -
Stsc121103g00005 434 Gene3D - 359 424 - -
Stsc121103g00005 434 FunFam uncharacterized protein LOC106759733 isoform X4 359 424 - -
Stsc121103g00005 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 275 IPR013083 -
Stsc121103g00005 434 SMART PHD_3 210 256 IPR001965 -
Stsc121103g00005 434 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 204 268 IPR047171 GO:0006338
Stsc121103g00005 434 Pfam PHD-finger 211 257 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121103g00005 Stsc-Chr121103 23199 30279 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc121103g00005 PHD 3.9e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121103g00005 - - gmx:100800660 599.356