Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121102g00003 ATGGGTCGGTGCCGAGCTTCGTCGCGAACTGCGGATGATGATCCAAACCTAAGATCCAAGAAAAAAAAGGCCGCTTCAGATGTAGGGAATTTAGACACTTCATCCCCAGATGTGGTAGCTCAAGGAGTAACTGATGGGAAAGGAGCTTTATACCACTGCAATTATTGCAACAAAGATATTTCAGGGGTGATTCGCATGAAGTGTGCTGTGTGTCAAGATTTTGATCTCTGTGTAGAGTGCTTCTCCGTTGGAGCTGAAGTGACACCTCACAAAAGCAATCATCCGTATATGATTATGGATAATCTATCTTTTCCCCTTATAACTCCAGATTGGAATGCAGATGAAGAGATGTTACTTTTAGAGGGCATTGAGATGTATGGATTTGGGAATTGGAATGAAGTTGCTGAGTATGTCGGGACAAAAAGCAAATCTCAATGTATTGACCACTATAATGCTATATATATGAACTCACCATGCTTTCCTCTCCCTGATTTGTCTCTTGTTATGGGAAAAAGCAAAGAGGAACTTCTTGAGATGGCAAAGAGATATGAAGTCAAGAAAGAATGTCCAGCAACTGCAGAGCTTACTCTGAAAGAAGAACCTCCCTTGTCTGAGGGAATAAACTCTCAAGAATCTAATAGGGCAGAAGTCAGTAATCAAACAATATCTATGTTAACCTCAGGTGGCAAAACTTACTCAAGTACAATTAAGAAGGCTTCCAATGTGAGCCAGAATTCTGATGGAGTTAAGGTGGAAGAATATCAATCAGATCGAAGCATTGGAGAGAAGAAACCAAAGTTATCTGGCAAAGTCAAGCCTTCTGTGACTGAGTTGAGTGGATACAGTTTTAAGAGAGAGGAATTCGAAATTGAATATGACAATGATGCAGAGCAAGTATTGGCAGATATGGAATTTAAGGACACTGATACTGAGGCTGAACGTGAAATGAAACTGCAGGTGCTCCGTATTTATTCACGAAGATTAGATGAGCGGAAGCGCAGAAAGAATTTTATACTTGAAAGAAATTTACTTTATCCTGATCCATTTGAGAAAACTCTCTCACCTGAGGAGGTTGAAATATGTCATCACTACAAGGTCCTCGAGCGGTTTCACTCGAAAGAAGAGCATATAGAGTTTCTCAAAAATATTATTGAAGAACACAGGCTTACAAAAAGAATACAGGATTTGCAGGAAGCTCGTGCCGCTGGCTGTCGAACTTCTGCAGAGGTTTACAAATTTATTGAACAGAAGAAAAAAGAAGCCGAACAACGTGTAGGTAGAGAAAATAGTCATGTTGGCATTGGTGCTAAGATGTTGCCAAGGCCGAATCATCTCAAAGGAGAACTTGATAGGAACTCACAGGGTCTCGATAAGGATACTACTGGGGCGAAGTATGTGGCTGCGACCATACAGGATCTATCAAGATCTCTTGAAGAATGGGATATTAGTGGATTTACCGGGGCTGAACTACTGTCTGAATCTGAGATAAAGCTTTGTAATGAGATCAGAATACTACCAGCACACTATTTCAAAATGCAGCATGTCTTATCATTAGAAATTTCAAAGGGCAACGTGTCGAATAAATGCGATGCGCATGCATTGTTCAAGGTCGAGCCAAGCAAGGTTGATAGAGTTTATGATATGCTTATAGAGAAGGGGATTGTTCCTGCAAATTGA 1677 0.4061 MGRCRASSRTADDDPNLRSKKKKAASDVGNLDTSSPDVVAQGVTDGKGALYHCNYCNKDISGVIRMKCAVCQDFDLCVECFSVGAEVTPHKSNHPYMIMDNLSFPLITPDWNADEEMLLLEGIEMYGFGNWNEVAEYVGTKSKSQCIDHYNAIYMNSPCFPLPDLSLVMGKSKEELLEMAKRYEVKKECPATAELTLKEEPPLSEGINSQESNRAEVSNQTISMLTSGGKTYSSTIKKASNVSQNSDGVKVEEYQSDRSIGEKKPKLSGKVKPSVTELSGYSFKREEFEIEYDNDAEQVLADMEFKDTDTEAEREMKLQVLRIYSRRLDERKRRKNFILERNLLYPDPFEKTLSPEEVEICHHYKVLERFHSKEEHIEFLKNIIEEHRLTKRIQDLQEARAAGCRTSAEVYKFIEQKKKEAEQRVGRENSHVGIGAKMLPRPNHLKGELDRNSQGLDKDTTGAKYVAATIQDLSRSLEEWDISGFTGAELLSESEIKLCNEIRILPAHYFKMQHVLSLEISKGNVSNKCDAHALFKVEPSKVDRVYDMLIEKGIVPAN 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121102g00003 558 PIRSF Txn_adaptor_ADA2 39 557 IPR016827 GO:0003713|GO:0006357|GO:0035065
Stsc121102g00003 558 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 159 IPR017930 -
Stsc121102g00003 558 SMART zz_5 47 92 IPR000433 GO:0008270
Stsc121102g00003 558 SMART sant 107 156 IPR001005 -
Stsc121102g00003 558 ProSiteProfiles Zinc finger ZZ-type profile. 48 104 IPR000433 GO:0008270
Stsc121102g00003 558 SUPERFAMILY Homeodomain-like 476 556 IPR009057 -
Stsc121102g00003 558 ProSitePatterns Zinc finger ZZ-type signature. 53 80 IPR000433 GO:0008270
Stsc121102g00003 558 Gene3D - 45 99 IPR043145 -
Stsc121102g00003 558 Gene3D - 104 156 - -
Stsc121102g00003 558 Gene3D - 471 556 IPR036388 -
Stsc121102g00003 558 MobiDBLite consensus disorder prediction 251 270 - -
Stsc121102g00003 558 CDD ZZ_ADA2 51 99 IPR041983 -
Stsc121102g00003 558 SUPERFAMILY RING/U-box 51 114 - -
Stsc121102g00003 558 FunFam Transcriptional adapter 2 104 156 - -
Stsc121102g00003 558 ProSiteProfiles SWIRM domain profile. 471 558 IPR007526 GO:0005515
Stsc121102g00003 558 ProSiteProfiles SANT domain profile. 106 158 IPR017884 -
Stsc121102g00003 558 SUPERFAMILY Homeodomain-like 103 157 IPR009057 -
Stsc121102g00003 558 MobiDBLite consensus disorder prediction 1 27 - -
Stsc121102g00003 558 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 51 552 - -
Stsc121102g00003 558 MobiDBLite consensus disorder prediction 248 271 - -
Stsc121102g00003 558 Pfam Zinc finger, ZZ type 51 91 IPR000433 GO:0008270
Stsc121102g00003 558 ProSiteProfiles Myb-like domain profile. 111 154 IPR001005 -
Stsc121102g00003 558 FunFam Transcriptional adapter 44 99 - -
Stsc121102g00003 558 CDD SANT 111 151 IPR001005 -
Stsc121102g00003 558 FunFam Transcriptional adapter 2 473 556 - -
Stsc121102g00003 558 Pfam Myb-like DNA-binding domain 110 151 IPR001005 -
Stsc121102g00003 558 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121102g00003 Stsc-Chr121102 24566 36510 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121102g00003 1 554 EF-hand Containing Proteins AT3G07740 52.696 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc121102g00003 Myb_DNA-binding 2.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121102g00003 K11314 - gmx:100779424 793.882