Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121101g00005 ATGCCGGGGCATCGGTCCAAGTCGTCGGAGAAGCACGCCGACGGTGGCGGTGCTAAGCCGCTCCGGCGGGATCCGTACGAGGTCCTCGGCGTCTCACGCAACTCCACCGATCAGGAAATCAAAACCGCTTACCGCAAAATGGCTCTCAAATATCATCCTGACAAGAATGCTAATGATCCTAAGGCAGCTGATATGTTCAAAGAGGTTACCTTTTCTTACAATATACTGTCAGATCCTGACAAGCGTCGTCAGTTTGACACCGCTGGTTTTGAGGCTGTTGAATCAGATAACCAAGAGTTGGAGTTGGACCTCTCAAGTTTGGGTGCTGTGAATACAATGTTTGCAGCACTTTTTAGTAAACTCGGTGTGCCAATTAAGACAACTGTATCAGCAACTGTTTTGGAAGAGGCACTCAATGGTGTAGTGACCATTCGTCCACTTCCATTGGGACAGTTTGTTTCTAGAAGGGTTGAGAAGCAATGTGCACATTTCTATTCAGTTACAATAACAGAAGAGGAAGCACGAGCTGGATTTGTTTGTCGAGTTCAATCGTCAGACAAAAGCAAGTTCAAGTTACTATATTTTGATCAGGAAGAAAATGGTGGATTAAGTCTTGCTCTCCAGGAAGACAGCGCAAAAACAGGGAAAGTTACCTCTGCTGGAATGTTTTTTCTTGGCTTTCCTGTTTATCGATTGGATCAGACGAACTCAATATCTGCTACGAAGGATCCAGATACATCATTTTTCAGAAAGCTTGAAGGGTTTCAGCCCTGTGAATTAACAGAACTGAAGGCTGGTACCCATGTGTTTGCAGTTTATGGTGACAACTTTTTCAAAAGTGCAAACTATACAATAGAAGCTCTATGTGCTGCACCATTTAGTGAAGAAAAAGAAAATTTAAGAAACATCGAAGCTCAAATTTTGTCTAAAAGGGCAGAGATATCGAAGTTTGAGACGGAGTACCGAGAGGTTCTGGCGCAGTTCACAGAGATGACAAGCAGATATGCAAATGAAATGCAAGAAATTGATGAACTATTGAAACAACGAAATGAAATACATGCATCATATACGGTCGCTCCTTTGAAACGGAGTTCAAGTAAGAGTCGGAGTAAAAGTTCTTCCAATGAAGCTAAAGAAGAGGTCCAGACAAAAGAGAAGAGGAATACAAGAGAACGACCAAAGAAGAAGAGATGGTACAACATTCACTTAAGAGTTGATAAGAGAAAGGCTTGCTAA 1236 0.4256 MPGHRSKSSEKHADGGGAKPLRRDPYEVLGVSRNSTDQEIKTAYRKMALKYHPDKNANDPKAADMFKEVTFSYNILSDPDKRRQFDTAGFEAVESDNQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGVVTIRPLPLGQFVSRRVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDQEENGGLSLALQEDSAKTGKVTSAGMFFLGFPVYRLDQTNSISATKDPDTSFFRKLEGFQPCELTELKAGTHVFAVYGDNFFKSANYTIEALCAAPFSEEKENLRNIEAQILSKRAEISKFETEYREVLAQFTEMTSRYANEMQEIDELLKQRNEIHASYTVAPLKRSSSKSRSKSSSNEAKEEVQTKEKRNTRERPKKKRWYNIHLRVDKRKAC 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121101g00005 411 Coils Coil 293 320 - -
Stsc121101g00005 411 FunFam Chaperone protein dnaJ 16 4 106 - -
Stsc121101g00005 411 MobiDBLite consensus disorder prediction 1 32 - -
Stsc121101g00005 411 PRINTS DnaJ domain signature 61 81 IPR001623 -
Stsc121101g00005 411 PRINTS DnaJ domain signature 81 100 IPR001623 -
Stsc121101g00005 411 PRINTS DnaJ domain signature 44 59 IPR001623 -
Stsc121101g00005 411 PRINTS DnaJ domain signature 26 44 IPR001623 -
Stsc121101g00005 411 MobiDBLite consensus disorder prediction 357 411 - -
Stsc121101g00005 411 MobiDBLite consensus disorder prediction 372 388 - -
Stsc121101g00005 411 ProSitePatterns Nt-dnaJ domain signature. 66 85 IPR018253 -
Stsc121101g00005 411 SMART dnaj_3 23 81 IPR001623 -
Stsc121101g00005 411 MobiDBLite consensus disorder prediction 1 21 - -
Stsc121101g00005 411 CDD DnaJ 24 78 IPR001623 -
Stsc121101g00005 411 Coils Coil 328 348 - -
Stsc121101g00005 411 MobiDBLite consensus disorder prediction 389 403 - -
Stsc121101g00005 411 SUPERFAMILY Chaperone J-domain 23 93 IPR036869 -
Stsc121101g00005 411 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 8 410 - -
Stsc121101g00005 411 Gene3D DnaJ domain 12 107 IPR036869 -
Stsc121101g00005 411 ProSiteProfiles dnaJ domain profile. 24 89 IPR001623 -
Stsc121101g00005 411 Pfam DnaJ domain 24 86 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121101g00005 Stsc-Chr121101 24739 28625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121101g00005 22 87 C2H2 Transcription Factor Family AT1G74250 39.437 2.29e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121101g00005 - - gmx:100800929 720.694