Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121099g00011 ATGGCCAACAGCCAAACACGCCCTAACTCCACCACCACCATAGACCCAAACAGCGGTTTCAACCCACATTCCAGAACCTTCCACAGCCTCCGTCCTAATATCCCCCTCCCTCCTCCCTCTCAGCCTCTCTCAATCACCGAATACGCACTCTCTCTCATCCCCTCCGCCGCCACCGCCGGCGTAACTACCGCTCTCATCGACGCCACCGCCGACATCCACCTCTCCTATTCTCTTCTCCTCCGCCGCATAAAATCACTCTCAATCTCCATCCAATCCCTCACACCACTCAAAAAAGGACACGTGGCACTCATCCTCACCCCTCCTTCTGTACACGTTCCTGTACTCTATCTTTCCCTCTTATCCCTCGGAATCGTTATTTCTCCCGCCAACCCTCTCAGCTCACCGGCCGAGTTGACTCACCTCATCCAACTCGTGAACCCTAAAATCGCCTTCACAACCTCCAAAATCGCCGCGAAAATCCCTAAACTACCCTTCGGCACTGTCCTCCTTGACTCACCGGAGTTCCTCTCCATGCTCGAGAACGAGTCAGGAGCTAGCGAACTCGAACGAGTCGAGGTGAGTCAGTCCGATCCAGCAGCGATTCTCTTCTCTTCCGGAACCACGGGAAGAGTGAAAGGCGTTCTCCTCACACACCGTAACCTCATCGCTCTAATCGGAGGGTTCTACCACCTGAAGCACATAACGGCGGCGCAAGAAGAGTCACCGGATGAGTGGAATTGGGCGGCGCTGGTGACGGTGCCGGTGTTCCACGTGTTCGGGTTCTTCATGCTGCTAAGAGGCTTAGCGAGTGGTGAAACGATGGTTCTAATGGAGAGGTTCGATTTCGAAGGGATGCTGAGGGCGGTGGAGAAATACAAGGTGAGTTACATGCCGGTGTCGCCGCCGCTGGTGGTGGCTCTGACGAAGTTGGAGGTGGCAAAGAAGTATGATCTGAGTTCGTTGCGGTTGTTAGGGTCCGGTGGAGCTCCGCTGGGGAAAGAGGTGGCAGAAAGTTTTAATGCTAAGTTCCCCAACGTCGAAATTGTGGAGGGGTATGGTCTAACTGAAAGTTCAGGAGGAGCAGCAAGGATGATAGGGCCTGATGAGGCGAAACGACACGGTTCTGTTGGTCGATTAGCTGAGGAAATGGAGGCTAAGATAGTTGACCCAATAACCGGTGAATCGTTGCCTCCCGGCCACAGAGGAGAGCTTTGGTTGCGTGGACCAACGATCATGAAATGTTATGTGGGAAATGAAGAGGCCACTGCTCAAACGTTGGATTCAGAGGGATGGTTGAAAACTGGTGATCTTTGTTATTTTGATTCTG 1327 0.5335 MANSQTRPNSTTTIDPNSGFNPHSRTFHSLRPNIPLPPPSQPLSITEYALSLIPSAATAGVTTALIDATADIHLSYSLLLRRIKSLSISIQSLTPLKKGHVALILTPPSVHVPVLYLSLLSLGIVISPANPLSSPAELTHLIQLVNPKIAFTTSKIAAKIPKLPFGTVLLDSPEFLSMLENESGASELERVEVSQSDPAAILFSSGTTGRVKGVLLTHRNLIALIGGFYHLKHITAAQEESPDEWNWAALVTVPVFHVFGFFMLLRGLASGETMVLMERFDFEGMLRAVEKYKVSYMPVSPPLVVALTKLEVAKKYDLSSLRLLGSGGAPLGKEVAESFNAKFPNVEIVEGYGLTESSGGAARMIGPDEAKRHGSVGRLAEEMEAKIVDPITGESLPPGHRGELWLRGPTIMKCYVGNEEATAQTLDSEGWLKTGDLCYFDS 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121099g00011 442 ProSitePatterns Putative AMP-binding domain signature. 201 212 IPR020845 -
Stsc121099g00011 442 MobiDBLite consensus disorder prediction 1 31 - -
Stsc121099g00011 442 SUPERFAMILY Acetyl-CoA synthetase-like 57 441 - -
Stsc121099g00011 442 MobiDBLite consensus disorder prediction 1 28 - -
Stsc121099g00011 442 Gene3D - 33 442 IPR042099 -
Stsc121099g00011 442 Pfam AMP-binding enzyme 59 441 IPR000873 -
Stsc121099g00011 442 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 23 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121099g00011 Stsc-Chr121099 58291 62242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121099g00011 6 442 Monolignol Biosynthesis Gene Families AT5G63380 56.793 2.58e-173 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121099g00011 K01904 - gmx:100804044 600.897