Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121099g00008 ATGGGGTCCTTTCAACACTTGGTTCTTCTTCTTCTTCTGATCTTTTATGTTGTTAATTGCAATGCTCAGTTACAATCTTCTCAAACACAAGTGCTTCTCCAACTGAAAAAGCACTTAGAATATCCAAAGCCATTGGATATTTGGAAAGATCGTTGGACAAATCTTTGTTCTTCTTCAACACAACAAGTGAATGTTTCATGCACTGAGAACTTTGTCACTGAGCTCTTGATCATTGGTGACAAAACACCAATCAGATTCAGACAAGAACAAAAGGAATTTGATGGTTATGCTGTTCAAGATCAAACACTTTCACAAGGTTTCTCAATGGATTCTTTTGTTGCTACTTTGTCAAGGCTAACAAATCTTAGAGTTCTAAGGCTTGTTTCTTTGGGCATTTGGGGTCCATTACCTGAAAGGATTCACAGGCTTTATGATCTTCAACACTTGGATTTGAGTTCCAATTTTCTATTTGGATCAATCCCTCCAAAGCTTTCAACAATGGTGAATCTCCAAACTCTTAATTTGGGTGATAACTTCTTCAATGATACCATTCTTCCAAGCTTTTCATTCTTCAACTCATCAAGTAACTTAACATATCTGAGCTTGAAGAACAACAAGTTGAAGGGTCATTTTCCAGATTCTGTTCTTGGCATCAGAACCCTCACTGAGATTGATGTTTCAAACAACAAAATCTCTGGTGGATTGAAAGATTTCAATGGCTTGATCAACTTGGAACACTTGGATTTGAGCTGGAACACCTTTGATTCAACACTTCCTTCAATGCCAAAAGGATTGAAGACTCTTTTCCTAAGCAGAAACTCATTCTCAGGTGAAATTCCAAAGCAATATCGTAAACTAAGCATGCTTCAAATGCTTGATGTTTCATTCAATTCACTCATAGGAGCTCTCCCTGCTGAGATTTTCAACTTGCCAAACATAACTCTCTTGAACATTTCATCAAACATGTTGAGTGGAACAATCAAGAACAACCTAAGATGTAGCGTTAGCCTTCGATTCGTCGACGTTTCGCATAACAGGCTAACCGGCGGCTTGCCTGACTGCCTGATCCGAACCCGGCCCGAAAATGATGGAATTTTTTTAAAGAGTGATGGGAATTGTTTATCTGGGAATTTTCAGCATCAGCATGAATTGTCATATTGCAAAGAAGAAGCTCCTCAATTGAAGAAGGAAAAGGAATCACATAAAAATGGAGCATTTGTTGTTGGTGTCATTGTTGGAATTCTTGTTATGGTTATGGTTTTTGTTTTGTGCATTGTGTTAATTTGTAAAAGGTATTATTCAAAAGGGGTATCAGAACAACACTTATTGCATAAATCAGTTCAAGATAGCTACTCAGCAAGTTTATCATCTGATATTGTGACAAATGCAAGGTATGTTTCTGAAGCTGCAAAGTTAGGCAGAGAAGAACTTCCATTGTGTAGGTCATATTCCTTGGAAGAGTTGAAGGAAGCTACAAATAACTTTGCCAACCCTAATTTTTTGGGTGAAAATTTGTATGGGAAGCTTTACAGAGGGAAACTAGAGAGTGGGATACAAGTTGTGATAAGGTGTTTGCCATTGTCAAAGAAGTACACAATTAGGAACTTCAAACTGAGGTTGGATTTGCTTGCAAAGCTTCGTCACCCTCATTTGGTGTCTCTTTTGGGGCATTGCATTGATGGTGTTGTTGCAGATCAAAGTGACACAAATGTCTTCCTTGTTTATGAATTTGTCTCAAATGGCAGCTTTCACACCTATCTCTCAGATAGTGGAGGGAAGGTTTATAATTGGTCAGAGAGATTATCAGTGCTAATTAGTGTTGCAAAGGCTATTCACTTCTTACACACTGGAATGATACCTGGCTTCTTTAAGAACAGACTTAAGACAAATAATATATTGATTAATGAGCATTGGATGCCAAAGTTGAGTGACTATGGATTGTCCATTATCTCTGAAGAAACTGATCCATCTGGGGTAAATGGAGAAAGCCCTGATTCAATGCAAATGAAAAGGTTAGAGGATGATGTGTATAGCTTTGGATTCATAATACTTGAGGCACTTGTTGGACCTTCATTATCTGCTAAAAGAGAAGCACTTATGCTCAATGAAAGGGGATCATTCAATAGTCAAGATGGATGGAGACAGATTGTGGATCCAATAGTGCTATCAACTTGCTCTAAAGAATCTCTATCTATTGTGATATCAATTTCCAACAAATGCATTTCTCCTGAGCCATGGAGTAGACCCTCCATTGAAGATGTCCTTTGGAACTTGCAATATGCTTCTCAAGTTCAGGCAACTGCTGATGGGCTTTAA 2316 0.3808 MGSFQHLVLLLLLIFYVVNCNAQLQSSQTQVLLQLKKHLEYPKPLDIWKDRWTNLCSSSTQQVNVSCTENFVTELLIIGDKTPIRFRQEQKEFDGYAVQDQTLSQGFSMDSFVATLSRLTNLRVLRLVSLGIWGPLPERIHRLYDLQHLDLSSNFLFGSIPPKLSTMVNLQTLNLGDNFFNDTILPSFSFFNSSSNLTYLSLKNNKLKGHFPDSVLGIRTLTEIDVSNNKISGGLKDFNGLINLEHLDLSWNTFDSTLPSMPKGLKTLFLSRNSFSGEIPKQYRKLSMLQMLDVSFNSLIGALPAEIFNLPNITLLNISSNMLSGTIKNNLRCSVSLRFVDVSHNRLTGGLPDCLIRTRPENDGIFLKSDGNCLSGNFQHQHELSYCKEEAPQLKKEKESHKNGAFVVGVIVGILVMVMVFVLCIVLICKRYYSKGVSEQHLLHKSVQDSYSASLSSDIVTNARYVSEAAKLGREELPLCRSYSLEELKEATNNFANPNFLGENLYGKLYRGKLESGIQVVIRCLPLSKKYTIRNFKLRLDLLAKLRHPHLVSLLGHCIDGVVADQSDTNVFLVYEFVSNGSFHTYLSDSGGKVYNWSERLSVLISVAKAIHFLHTGMIPGFFKNRLKTNNILINEHWMPKLSDYGLSIISEETDPSGVNGESPDSMQMKRLEDDVYSFGFIILEALVGPSLSAKREALMLNERGSFNSQDGWRQIVDPIVLSTCSKESLSIVISISNKCISPEPWSRPSIEDVLWNLQYASQVQATADGL 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121099g00008 771 Gene3D Ribonuclease Inhibitor 264 391 IPR032675 -
Stsc121099g00008 771 Pfam Leucine Rich Repeat 169 191 IPR001611 GO:0005515
Stsc121099g00008 771 Pfam Leucine Rich Repeat 146 163 IPR001611 GO:0005515
Stsc121099g00008 771 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 221 759 - -
Stsc121099g00008 771 Gene3D Transferase(Phosphotransferase) domain 1 578 769 - -
Stsc121099g00008 771 Gene3D Ribonuclease Inhibitor 25 263 IPR032675 -
Stsc121099g00008 771 Gene3D Phosphorylase Kinase; domain 1 456 577 - -
Stsc121099g00008 771 SMART LRR_typ_2 167 192 IPR003591 -
Stsc121099g00008 771 SMART LRR_typ_2 286 310 IPR003591 -
Stsc121099g00008 771 SMART LRR_typ_2 143 166 IPR003591 -
Stsc121099g00008 771 SMART LRR_typ_2 241 264 IPR003591 -
Stsc121099g00008 771 ProSiteProfiles Protein kinase domain profile. 495 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121099g00008 771 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 265 392 - -
Stsc121099g00008 771 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 578 771 - -
Stsc121099g00008 771 Pfam Leucine rich repeat 289 347 IPR001611 GO:0005515
Stsc121099g00008 771 Pfam Leucine rich repeat 195 252 IPR001611 GO:0005515
Stsc121099g00008 771 SUPERFAMILY Protein kinase-like (PK-like) 478 759 IPR011009 -
Stsc121099g00008 771 SUPERFAMILY L domain-like 26 354 - -
Stsc121099g00008 771 Pfam Protein tyrosine and serine/threonine kinase 501 754 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121099g00008 Stsc-Chr121099 32965 38829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121099g00008 1 703 Miscellaneous Gene Families AT5G14210 46.835 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Stsc121099g00008 PK_Tyr_Ser-Thr 1.6e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121099g00008 - - gmx:100802978 1043.88