Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121099g00006 ATGAAAATGCTGAACCGCATATCAGAGATTGGATCAACAATAGTAATGGGTAAAAATGAAGGTCTCCACACATCTGGTCATGCTTATCGTGGAGAATTGGAGGAAGTACTTCGAATTGTGAAGCCGCAACATTTTCTTCCCATACATGGAGAACTCTTGTTCCTGAAGGAGCATGAATTACTTGGAAAATCAAATGGCATTCGTCACACTGCTGTTATTAAAAATGGAGAGATGCTTGGTGTTTCACATTTGAGAAATAGGAGAGTCCTTTCTAATGGTTTCATTTCCCTTGGAAGAGAGAATTTACAGTTGAAGTACAGTGACGGTGACAAAGCATTTGGTACATCAAGCGACCTCTTCATTGATGAAAGATTGAAAATTGCATTAGATGGCATCATTGTGGTTAGCATGGAAATTTTTCGCCCCCAACGTGCAGACGGTTTGGCTGAACACACCTTAAAAGGGAAGATAAGGATTACCACAAGATGCCTATGGCTTGACAAGGGAAAGTTGTTGGATGCACTGCATAAAGCTGCTCATGCTGCTCTTTCTAGCTGCCCTGTAAAGTGTCCACTGGCTCACATGGAAAGAACTGTGGCCGAGGTCTTGAGGAAGATGGTGAGGAAGTACAGCGGTAAACGGCCCGAAGTTATTGCTATTGCCATAGAAAATCCAGCTGCTGTTCTTGCTGAGGAGATAAACACAAAGTTATCTGGCAAGTCACATGTGGATCATGGAACGTCAACTTTAAGAAAAGTAGTAGATGGGCACCGGAAGGAAAATCAGCCAGCCACATTGCAAACAAGAGATGATGGCAATGATGTTGATGTTGAAGGACTTCTACCTGAGGAAGACACTGCTCCACCAAGTGAAGAAGCTGACGGTGATTTATTGGATTCAGAGAGTTCAGATGAATTTTGGAAGCCATTTATTGCATCCTCATCAGCTGAGAAGTCAGTCAAAGCTAACAATGGTTATGTTCCACGAAAGGAGCACAAGTCTGATCTTAAGAAAGATGATTCCGAAGACATTGATGAAGCCAACTTTGTAAAAGCATCCAGTTCTGAACTCAAGTCGCCGAAGTCAGTGAAGAGGAATAAATGGAAACCTGAAGAAATTAAGAAGTTGATTGACATGCGCGGGGAACTACACGATAGATTTCAAGTTGTGAAGGGAAGGATGGCTTTATGGGAAGAAATATCTCAGAGCTTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAGTGCAAATCACTTTGGACATCTTTGGTGCAGAAATATCAGGAGATTAAGAACGAGAAGGGTAGTAGCAAGAGTAGTTGGCAATATCTCAAGGACATGGAAAAGATAATGCCTGATAGTGAAGCAATGGCAACAAAATGA 1383 0.423 MKMLNRISEIGSTIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSNGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGRENLQLKYSDGDKAFGTSSDLFIDERLKIALDGIIVVSMEIFRPQRADGLAEHTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVKCPLAHMERTVAEVLRKMVRKYSGKRPEVIAIAIENPAAVLAEEINTKLSGKSHVDHGTSTLRKVVDGHRKENQPATLQTRDDGNDVDVEGLLPEEDTAPPSEEADGDLLDSESSDEFWKPFIASSSAEKSVKANNGYVPRKEHKSDLKKDDSEDIDEANFVKASSSELKSPKSVKRNKWKPEEIKKLIDMRGELHDRFQVVKGRMALWEEISQSLLADGISRSPGQCKSLWTSLVQKYQEIKNEKGSSKSSWQYLKDMEKIMPDSEAMATK 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121099g00006 460 CDD GT1 366 431 - -
Stsc121099g00006 460 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 22 58 IPR011108 -
Stsc121099g00006 460 MobiDBLite consensus disorder prediction 277 300 - -
Stsc121099g00006 460 SUPERFAMILY Metallo-hydrolase/oxidoreductase 3 79 IPR036866 -
Stsc121099g00006 460 Pfam Myb/SANT-like DNA-binding domain 365 450 IPR044822 -
Stsc121099g00006 460 MobiDBLite consensus disorder prediction 245 276 - -
Stsc121099g00006 460 MobiDBLite consensus disorder prediction 239 301 - -
Stsc121099g00006 460 Gene3D - 368 429 - -
Stsc121099g00006 460 ProSiteProfiles Myb-like domain profile. 360 424 IPR001005 -
Stsc121099g00006 460 PANTHER RIBONUCLEASE J 1 460 - -
Stsc121099g00006 460 MobiDBLite consensus disorder prediction 324 342 - -
Stsc121099g00006 460 MobiDBLite consensus disorder prediction 318 342 - -
Stsc121099g00006 460 Gene3D - 3 95 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121099g00006 Stsc-Chr121099 18216 21720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121099g00006 350 451 Trihelix Transcription Factor Family AT2G38250 32.381 7.38e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc121099g00006 Myb_DNA-bind_4 1.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121099g00006 - - lja:Lj0g3v0261399.2 686.026