Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121094g00002 ATGGACATGGACATGGAGCTTGATTGGGATCTCCATGCGGTGGTTCGAGGCTGCTCCACCCTCACCTCTTCATCTTCTTCTTCGTCTTCATCCTCTTCTGGCTTCAGTTACTTTCACTCTCAGGCTTCTCCTTCTTCTGTTCTTGATGCTGAAGAACAACAACAACAACAACAACAACAAGGAACTACCAACAATGTTATTATGTCCCTTTCTTCTGCTGCTCCTTATTCATACCCCTTTGGACCAAGGTCTGCCATTGAAGAGTTGCATGAGCTCTGCAAGCCTTTCTTCACAAAATCACTCCCTCAACAACAACAATCATTGCAAGCTTCTTCTCCTTTGTCTTCATTCTCTGTAGCAGCGCCACCACCACCACCACCACCAAAACCGGTTCAACCACAAGAGAAGCAGAGAACCAACCCCAACAAGCATCCTCGCTCTGGTGGAGATTCTGTCACAACCCCAAGATCTAAAAGAAGGAAGAACCAGCTCAAGAGAGTTTGTCAAGTTCCAGTTGAGAATCTCTCCTCAGACATATGGGCATGGAGGAAATATGGACAGAAACCCATAAAGGGGTCACCATATCCAAGGGGATACTATAGATGTAGCAGCTCAAAGGGATGTTTGGCAAGGAAACAAGTTGAAAGGAACAGAACAGATCCAACAATGTTCATAGTAACCTACACAGGAGAACACAACCACCCTGCTCCAACTCACAGGAACTCCCTCGCCGGATCGACGCGCCAAAAGCCGATGACACCACAGGCAGCCGCTGCGGCCGCCACTGCCAACGGTGGAGAATCTGATGAGAAGGCCTTGACACCGACAAAACCGGCTTCACCTGATACCCCAGTTGCAGAAGAAGAAGAGGCTTTACCACAACATTGTGAAAAGTCATCAGCCAGCAGGGAAGATAAAGAAGAGGAATTGGGTGATGATGATGATGGAGATGAGTTTGGTTTATCTGATATGGTGATACCTGATGATTTCTTTGATAGTTTTGATGAACTGAAAGAGATCACATTCACAGGTATTGATGATGATGGAGTTAGAGGAGATAGTAGTTGCTTTGTTGATCCCTTTTCAGCCATTGCTATGCCTTCTTGGGTTGCAAATAGTGCTGCCACTGCTGCTGGTGGTAGCTGA 1146 0.4668 MDMDMELDWDLHAVVRGCSTLTSSSSSSSSSSSGFSYFHSQASPSSVLDAEEQQQQQQQQGTTNNVIMSLSSAAPYSYPFGPRSAIEELHELCKPFFTKSLPQQQQSLQASSPLSSFSVAAPPPPPPPKPVQPQEKQRTNPNKHPRSGGDSVTTPRSKRRKNQLKRVCQVPVENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRTDPTMFIVTYTGEHNHPAPTHRNSLAGSTRQKPMTPQAAAAAATANGGESDEKALTPTKPASPDTPVAEEEEALPQHCEKSSASREDKEEELGDDDDGDEFGLSDMVIPDDFFDSFDELKEITFTGIDDDGVRGDSSCFVDPFSAIAMPSWVANSAATAAGGS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121094g00002 381 Pfam WRKY DNA -binding domain 178 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc121094g00002 381 ProSiteProfiles WRKY domain profile. 171 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc121094g00002 381 MobiDBLite consensus disorder prediction 234 253 - -
Stsc121094g00002 381 FunFam WRKY transcription factor 22 160 230 - -
Stsc121094g00002 381 MobiDBLite consensus disorder prediction 118 134 - -
Stsc121094g00002 381 MobiDBLite consensus disorder prediction 104 168 - -
Stsc121094g00002 381 MobiDBLite consensus disorder prediction 229 324 - -
Stsc121094g00002 381 MobiDBLite consensus disorder prediction 288 306 - -
Stsc121094g00002 381 SUPERFAMILY WRKY DNA-binding domain 174 237 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc121094g00002 381 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 8 340 IPR044810 GO:0003700
Stsc121094g00002 381 MobiDBLite consensus disorder prediction 307 322 - -
Stsc121094g00002 381 SMART WRKY_cls 176 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc121094g00002 381 Gene3D WRKY domain 160 230 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc121094g00002 381 MobiDBLite consensus disorder prediction 20 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121094g00002 Stsc-Chr121094 5760 8319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121094g00002 5 380 WRKY Transcription Factor Family AT4G01250 42.119 1.60e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc121094g00002 WRKY 7.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121094g00002 K13425 - gmx:100798084 373.244