Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121093g00002 ATGGAGAACACCAACAACAACCCTCACCACCAGGCCCAACCAGGCCCATACCCAGGCCCACCAACACTCCCACCTCCCACCACCACCACCACCGCACCACCACCACCTTCCTCCGCCGCACCATTCCACCACCTCCTCCAGCAACAACAGCAACAGCTCCAGATGTTCTGGTCCTACCAGCGCCAAGAAATCGAACACGTCAACGACTTCAAGAACCACCAGCTTCCATTGGCGCGCATCAAGAAGATCATGAAGGCCGACGAAGACGTCCGCATGATCTCCGCCGAAGCCCCAATCCTCTTCGCCAAAGCCTGCGAGCTTTTCATCCTCGAGCTCACGATCCGTTCATGGCTTCACGCCGAAGAGAACAAGCGAAGGACGCTTCAGAAGAACGACATCGCCGCCGCCATTACGCGAACCGATATCTTCGATTTCTTGGTTGATATTGTTCCCAGGGACGATATCAAGGACGATGCGGCGGCGCTCGGCGGAATTGTCGCCGCTGCGGCGGCGGCGACTGCGAGTGGTGTTCCGTACTATTATCCGCCCATGGGCCAGCCCGCGGGCCCGCCCGGTGGGATGATGATTGGGAGGCCCGCAGTGGACCCGGCGACGGGGGTTTACGTGCAGCCGCCGTCGCAGGCGTGGCAGAGTGTTTGGCAGACTGCTGCTGAGGATGGCAGCTATGGTGGTGGCGCCACCGCCGCTCAAGGGAATCTTGATGGACAGAGCTGA 735 0.6041 MENTNNNPHHQAQPGPYPGPPTLPPPTTTTTAPPPPSSAAPFHHLLQQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDDIKDDAAALGGIVAAAAAATASGVPYYYPPMGQPAGPPGGMMIGRPAVDPATGVYVQPPSQAWQSVWQTAAEDGSYGGGATAAQGNLDGQS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121093g00002 244 SUPERFAMILY Histone-fold 27 146 IPR009072 GO:0046982
Stsc121093g00002 244 FunFam Nuclear transcription factor Y subunit gamma 43 152 - -
Stsc121093g00002 244 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 47 163 - -
Stsc121093g00002 244 Gene3D Histone, subunit A 41 152 IPR009072 GO:0046982
Stsc121093g00002 244 Pfam Core histone H2A/H2B/H3/H4 27 137 IPR007125 GO:0003677
Stsc121093g00002 244 MobiDBLite consensus disorder prediction 13 40 - -
Stsc121093g00002 244 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121093g00002 Stsc-Chr121093 13443 16951 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121093g00002 39 243 CCAAT-HAP5 Transcription Factor Family AT3G48590 84.615 1.05e-109 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Stsc121093g00002 Histone 1.9e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121093g00002 - - pcin:129320575 315.079