Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121091g00008 ATGGTTGGCAAACTGGTTCAGTTAGCTGCTAGGGATGATATTCAGTCTTTGATTGTGGTTGCTCAGCTATTCAAGCCGAGTGTCTATCTGAATGAAAGCTATATTCAGAACACCCGTTACATTTCTCAGGTTTTCCTAAATCCAGACTTTCCGGAAGTCAATGAAATTAAAATGAGCTTATTGGCACAGGGTGAAGCTGCCACACAAGGGATTGCACATGTTGAGTCCCAGCCCCAATACTCAGTTGAGGGTGAGTTAGAGGGTGGTGCCTGTACAATCACATCCATTGATGATGTTATGAACCTAACTGAGGAGACATCTTGCTGGATCCTGGCAAAAATTATGTCCGTTGAGTCAACCCCCAATAGTTGGTGCTATCTGTCATGTCATAGATGCTTTAAGAAAGTGCAGGAGGTGAAGAATGGCTATCAATGTCTCAGGTGTAAAAGGATGATTGCAGAACCAAGTCTCAGGTATCGCCTACATCTGATTGTTGCTGATAGTACTGGTTGCTTGAATCTTATGATGTGGAATGATGAGGCCAAGCTAATAATTGGGAAATCTGCTAAGGAAGTTATAGCTTCAGAGGTAATGCTCTTATGA 603 0.4262 MVGKLVQLAARDDIQSLIVVAQLFKPSVYLNESYIQNTRYISQVFLNPDFPEVNEIKMSLLAQGEAATQGIAHVESQPQYSVEGELEGGACTITSIDDVMNLTEETSCWILAKIMSVESTPNSWCYLSCHRCFKKVQEVKNGYQCLRCKRMIAEPSLRYRLHLIVADSTGCLNLMMWNDEAKLIIGKSAKEVIASEVMLL 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121091g00008 200 Pfam Replication factor-A C terminal domain 119 193 IPR013955 -
Stsc121091g00008 200 SUPERFAMILY Nucleic acid-binding proteins 94 194 IPR012340 -
Stsc121091g00008 200 ProSiteProfiles PAS repeat profile. 163 200 IPR000014 -
Stsc121091g00008 200 CDD RPA1_DBD_C 92 191 IPR047192 -
Stsc121091g00008 200 Gene3D - 80 198 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121091g00008 Stsc-Chr121091 42530 44664 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121091g00008 42 192 Core DNA Replication Machinery Family AT5G08020 31.613 2.40e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121091g00008 - - ahf:112718168 199.134