Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121091g00007 ATGGCTTCTAGAAATGGGGTATCTGCCTCGGGTGAGCATGGTGATCGAGTGGCTGATATCCGACCGGCGAGCATCTACTGTAAGTTGGTAGTGGCGGTAGTCCGACTGTATGAATTGCCAAACCAATGGATTTCGAAGGATGCCACTAGCATTGAGATGGTTCTTCAAGATCGAGAGGGGGATCGTATCCATTGTTCGATCGTCAGAGGCCATGTGGGTATGTTCAAAACTGTGATCCGCGAGAATGGGATTTACTCAATGCAGAATTTCGTGATTCACAGGAATGTGAAACCACCGAAAACAACACCTCATCAGTATAAGCTCAGCTTTTATGGGAAGACAGAAGTAAGAACTATTGCCAGCACTCCCTTTGAGTTTAGCCGTTTTCGTTTCATGCCCTTTCCTGATATTGAGGCCATGTCGGGGCAGAATGATCCGCATCATATAGCCAAGGAAGACCCAAAAGATATGCTAACGAAAACTGGGCAGCAAACCCGTTGCATGACCCTGTATCTGGAGGATTTAGAGAGGAACAAGATTAAGTGTACAGTTTTTGGGGATATGGTTGGCAAACTGGTTCAGTTAGCTGCTAGGGATGATATTCAGTCTTTGATTGTGGTTGCTCAGCTATTCAAGCCGAGTGTCTATCTGAATGAAAGCTATATTCAGAACACCCGTTACATTTCTCAGGTTTTCCTAAATCCAGACTTTCCGGAAGTCAATGAAATTAAAATGAGCTTATTGGCACAGGGTGAAGCTGCCACACAAGGGATTGCACATGTTGAGTCCCAGCCCCAATACTCAGTTGAGGGTGAGTTAGAGGGTGGTGCCTGTACAATCACATCCATTGATGATGTTATGAACCTAACTGAGGAGACATCTTGCTGGATCCTGGCAAAAATTATGTCCGTTGAGTCAACCCCCAATAGTTGGTGCTATCTGTCATGTCATAGATGCTTTAAGAAAGTGCAGGAGGTGAAGAATGGCTATCAATGTCTCAGGTGTAAAAGGATGATTGCAGAACCAAGTCTCAGGTATCGCCTACATCTGATTGTTGCTGATAGTACTGGTTGCTTGAATCTTATGATGTGGAATGATGAGGCCAAGCTAATAATTGGGAAATCTGCTAAGGAAGTTATAGCTTCAGAGGGTATCGATCATAGTTTGTCTGGCGTGCAGCAAAAGACTTTCTCTGTGGAAGCTGAATCAGAGGAACCTGGCATTGGAATTGTGTCTCTATCAAAGGATTCAAATTCACAGGATCTTATTGAGGATGTTGATGGAACTCCTGCAAAACCAGCTACTGAGGATTCCATTCCTGCTGCTGGTTTGAGTGGATTGGCAAGCCCAGGGATGAATGGATCGAGTAATAGACCTCCTCGGCGCACGGCTACAAAGAGGAAGTTTGATTAG 1413 0.4487 MASRNGVSASGEHGDRVADIRPASIYCKLVVAVVRLYELPNQWISKDATSIEMVLQDREGDRIHCSIVRGHVGMFKTVIRENGIYSMQNFVIHRNVKPPKTTPHQYKLSFYGKTEVRTIASTPFEFSRFRFMPFPDIEAMSGQNDPHHIAKEDPKDMLTKTGQQTRCMTLYLEDLERNKIKCTVFGDMVGKLVQLAARDDIQSLIVVAQLFKPSVYLNESYIQNTRYISQVFLNPDFPEVNEIKMSLLAQGEAATQGIAHVESQPQYSVEGELEGGACTITSIDDVMNLTEETSCWILAKIMSVESTPNSWCYLSCHRCFKKVQEVKNGYQCLRCKRMIAEPSLRYRLHLIVADSTGCLNLMMWNDEAKLIIGKSAKEVIASEGIDHSLSGVQQKTFSVEAESEEPGIGIVSLSKDSNSQDLIEDVDGTPAKPATEDSIPAAGLSGLASPGMNGSSNRPPRRTATKRKFD 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121091g00007 470 Pfam Domain of unknown function DUF223 52 137 IPR003871 -
Stsc121091g00007 470 MobiDBLite consensus disorder prediction 419 470 - -
Stsc121091g00007 470 Gene3D - 124 256 IPR012340 -
Stsc121091g00007 470 SUPERFAMILY Nucleic acid-binding proteins 17 123 IPR012340 -
Stsc121091g00007 470 Gene3D - 15 118 IPR012340 -
Stsc121091g00007 470 SUPERFAMILY Nucleic acid-binding proteins 129 248 IPR012340 -
Stsc121091g00007 470 CDD RPA1_DBD_A_like 28 116 - -
Stsc121091g00007 470 Pfam Replication factor-A C terminal domain 306 382 IPR013955 -
Stsc121091g00007 470 SUPERFAMILY Nucleic acid-binding proteins 281 381 IPR012340 -
Stsc121091g00007 470 CDD RPA1_DBD_C 279 378 IPR047192 -
Stsc121091g00007 470 CDD RPA1_DBD_B_like 156 247 - -
Stsc121091g00007 470 Gene3D - 268 426 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121091g00007 Stsc-Chr121091 41518 44664 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121091g00007 55 379 Core DNA Replication Machinery Family AT5G08020 24.855 5.34e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121091g00007 - - ahf:112695129 360.147