Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121091g00006 ATGGGAAGACAGAAGAGGAACAAGATTAAGTGTACAGTTTTTGGGGATATGGTTGGCAAACTGGTTCAGTTAGCTGCTAGGGATGATATTCAGTCTTTGATTGTGGTTGCTCAGCTATTCAAGCCGAGTGTCTATCTGAATGAAAGCTATATTCAGAACACCCGTTACATTTCTCAGGTTTTCCTAAATCCAGACTTTCCGGAAGTCAATGAAATTAAAATGAGCTTATTGGCACAGGGTGAAGCTGCCACACAAGGGATTGCACATGTTGAGTCCCAGCCCCAATACTCAGTTGAGGGTGAGTTAGAGGGTGGTGCCTGTACAATCACATCCATTGATGATGTTATGAACCTAACTGAGGAGACATCTTGCTGGATCCTGGCAAAAATTATGTCCGTTGAGTCAACCCCCAATAGTTGGTGCTATCTGTCATGTCATAGATGCTTTAAGAAAGTGCAGGAGGTGAAGAATGGCTATCAATGTCTCAGGTGTAAAAGGATGATTGCAGAACCAAGTCTCAGGTATCGCCTACATCTGATTGTTGCTGATAGTACTGGTTGCTTGAATCTTATGATGTGGAATGATGAGGCCAAGCTAATAATTGGGAAATCTGCTAAGGAAGTTATAGCTTCAGAGAAAGGGAAATCTGTTAATTCACTCCCTAAGGCATTTGATTTAATTCTGGAGAAGAAGTTCCTGTTTAAGTTGGAAGTATCCTTTCAGAATGTCAATTCAATTGATTACCTCTATAGTGTTGAAAAGATCTGTCAAGATGAGGCACTTATTGCCATATATGCACCACAATGTCCATCGGAAATTCAAGTGTCTGATGCCATTGAATTCAGATTCACATACATTTTTATCATGTCAATACCATCTGCAGTTTGCCTTAGTTTGATAATTCCTTTTTGCTTTTTAGGGTATCGATCATAG 933 0.4019 MGRQKRNKIKCTVFGDMVGKLVQLAARDDIQSLIVVAQLFKPSVYLNESYIQNTRYISQVFLNPDFPEVNEIKMSLLAQGEAATQGIAHVESQPQYSVEGELEGGACTITSIDDVMNLTEETSCWILAKIMSVESTPNSWCYLSCHRCFKKVQEVKNGYQCLRCKRMIAEPSLRYRLHLIVADSTGCLNLMMWNDEAKLIIGKSAKEVIASEKGKSVNSLPKAFDLILEKKFLFKLEVSFQNVNSIDYLYSVEKICQDEALIAIYAPQCPSEIQVSDAIEFRFTYIFIMSIPSAVCLSLIIPFCFLGYRS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121091g00006 310 Pfam Replication factor-A C terminal domain 135 242 IPR013955 -
Stsc121091g00006 310 CDD RPA1_DBD_C 108 255 IPR047192 -
Stsc121091g00006 310 Gene3D - 97 261 IPR012340 -
Stsc121091g00006 310 Gene3D - 2 85 IPR012340 -
Stsc121091g00006 310 SUPERFAMILY Nucleic acid-binding proteins 110 247 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121091g00006 Stsc-Chr121091 41518 44664 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121091g00006 58 245 Core DNA Replication Machinery Family AT5G08020 30.928 4.42e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121091g00006 - - ahf:112718168 262.692