Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121091g00005 ATGGCTTCTAGAAATGGGGTATCTGCCTCGGGTGAGCATGGTGATCGAGTGGCTGATATCCGACCGGCGAGCATCTACTGTAAGTTGGTAGTGGCGGTAGTCCGACTGTATGAATTGCCAAACCAATGGATTTCGAAGGATGCCACTAGCATTGAGATGGTTCTTCAAGATCGAGAGGGGGATCGTATCCATTGTTCGATCGTCAGAGGCCATGTGGGTATGTTCAAAACTGTGATCCGCGAGAATGGGATTTACTCAATGCAGAATTTCGTGATTCACAGGAATGTGAAACCACCGAAAACAACACCTCATCAGTATAAGCTCAGCTTTTATGGGAAGACAGAAGTTTTCCTAAATCCAGACTTTCCGGAAGTCAATGAAATTAAAATGAGCTTATTGGCACAGGGTGAAGCTGCCACACAAGGGATTGCACATGTTGAGTCCCAGCCCCAATACTCAGTTGAGGGTGAGTTAGAGGGTGGTGCCTGTACAATCACATCCATTGATGATGTTATGAACCTAACTGAGGAGACATCTTGCTGGATCCTGGCAAAAATTATGTCCGTTGAGTCAACCCCCAATAGTTGGTGCTATCTGTCATGTCATAGATGCTTTAAGAAAGTGCAGGAGGTGAAGAATGGCTATCAATGTCTCAGGTGTAAAAGGATGATTGCAGAACCAAGTCTCAGGTATCGCCTACATCTGATTGTTGCTGATAGTACTGGTTGCTTGAATCTTATGATGTGGAATGATGAGGCCAAGCTAATAATTGGGAAATCTGCTAAGGAAGTTATAGCTTCAGAGAAAGGGAAATCTGTTAATTCACTCCCTAAGGCATTTGATTTAATTCTGGAGAAGAAGTTCCTGTTTAAGTTGGAAGTATCCTTTCAGAATGTCAATTCAATTGATTACCTCTATAGTGTTGAAAAGATCTGTCAAGATGAGGCACTTATTGCCATATATGCACCACAATGTCCATCGGAAATTCAAGTGTCTGATGCCATTGAATTCAGATTCACATACATTTTTATCATGTCAATACCATCTGCAGTTTGCCTTAGTTTGATAATTCCTTTTTGCTTTTTAGGGTATCGATCATAG 1101 0.4214 MASRNGVSASGEHGDRVADIRPASIYCKLVVAVVRLYELPNQWISKDATSIEMVLQDREGDRIHCSIVRGHVGMFKTVIRENGIYSMQNFVIHRNVKPPKTTPHQYKLSFYGKTEVFLNPDFPEVNEIKMSLLAQGEAATQGIAHVESQPQYSVEGELEGGACTITSIDDVMNLTEETSCWILAKIMSVESTPNSWCYLSCHRCFKKVQEVKNGYQCLRCKRMIAEPSLRYRLHLIVADSTGCLNLMMWNDEAKLIIGKSAKEVIASEKGKSVNSLPKAFDLILEKKFLFKLEVSFQNVNSIDYLYSVEKICQDEALIAIYAPQCPSEIQVSDAIEFRFTYIFIMSIPSAVCLSLIIPFCFLGYRS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121091g00005 366 CDD RPA1_DBD_C 164 311 IPR047192 -
Stsc121091g00005 366 Pfam Replication factor-A C terminal domain 191 298 IPR013955 -
Stsc121091g00005 366 Gene3D - 15 117 IPR012340 -
Stsc121091g00005 366 Pfam Domain of unknown function DUF223 52 117 IPR003871 -
Stsc121091g00005 366 SUPERFAMILY Nucleic acid-binding proteins 17 126 IPR012340 -
Stsc121091g00005 366 Gene3D - 153 317 IPR012340 -
Stsc121091g00005 366 CDD RPA1_DBD_A_like 28 116 - -
Stsc121091g00005 366 SUPERFAMILY Nucleic acid-binding proteins 166 303 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121091g00005 Stsc-Chr121091 41518 44664 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121091g00005 108 301 Core DNA Replication Machinery Family AT5G08020 30.500 2.17e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121091g00005 - - ahf:112718168 204.527