Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121088g00001 ATGAGCGTTGTTGAACCAAATTACAACAGCTCAGAAACCGAAGTCAGTTACGCTTCAAATTCAACTAATTCCAAGAATAACAAGAATACAACAACTTTAACAGAAACCGCAACTGCAACCGTAACCGTAACCGCAAAGCGCATTAGGGATTCTTCTAACAAGCACCCGGTGTACCGGGGTGTACGGATGCGGAATTGGGGGAAGTGGGTTTCTGAAATTAGAGAGCCGCGCAAGAAGTCTCGCATATGGCTTGGAACATTCTCGACCCCTGAAATGGCCGCCAGGGCACACGACGTCGCCGCCTTCAGTATCAAAGGCTCCGCCGCCATCCTCAATTTCCCTAACCTCGTACACTCCCTCCCCCGCCCTGCCTCCCTCGCCCCCCGCGACGTCCAGGCCGCTGCTGCCAAAGCCGCTAAAATGGTCAATTTCGATTCTCCGACTACGTCTTCATCGTCGTCGTCGTTATCGTTGTCGTCTGCTTCTTCCTCGATGGAGTTGTGCTCTGACGAGGAGGAGCTGAGCGAGATCATTGAGCTTCCGAGGCTGGAGAGTGGTGAGTTGGATAAGGAGTTTGTTTTTGCTGACTCGGTGGACGGGTGGATGTACCAGCCGCCGCCGTGGTTTTCGCCGGAGATGGCTTCTGCGACGGCGGACGAGGAGGAAGTTGTTGAAGATGGGGTCGTAAGTGCTTCTGGAAGTTTGCTTTGGAATTATTATTACTACTACTAA 732 0.5232 MSVVEPNYNSSETEVSYASNSTNSKNNKNTTTLTETATATVTVTAKRIRDSSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAAFSIKGSAAILNFPNLVHSLPRPASLAPRDVQAAAAKAAKMVNFDSPTTSSSSSSLSLSSASSSMELCSDEEELSEIIELPRLESGELDKEFVFADSVDGWMYQPPPWFSPEMASATADEEEVVEDGVVSASGSLLWNYYYYY 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121088g00001 243 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Stsc121088g00001 243 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Stsc121088g00001 243 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Stsc121088g00001 243 MobiDBLite consensus disorder prediction 1 33 - -
Stsc121088g00001 243 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
Stsc121088g00001 243 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Stsc121088g00001 243 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Stsc121088g00001 243 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 189 - -
Stsc121088g00001 243 FunFam Ethylene-responsive transcription factor 2 56 115 - -
Stsc121088g00001 243 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Stsc121088g00001 243 SUPERFAMILY DNA-binding domain 57 115 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121088g00001 Stsc-Chr121088 7183 7914 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121088g00001 13 208 AP2-EREBP Transcription Factor Family AT5G11590 57.212 2.54e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc121088g00001 AP2 7.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121088g00001 K09286 - gmx:100305349 221.476