Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121086g00002 ATGGAAATTAGAAGAGAGGATGATGAGATCGAAGACATTTCAAGAATGTCACCCCCATTAGTGGGTTCTATGAGAATTGAAGGGTGCAACAATAATAATCACAAGAAGGAGTTCATGTCTCATTCATACTTTCACAACAAGTGCTCTGATGAGATTGATATACAAATTGATGATTCCAGTTTCAACCAAAATCGCCCTCTCCCTATATATCTCAAGTTTGAAGATGTAGAGTTTAGGGTGAGAAACAATACTCGAGCAGGTTCCAATAACCCTCTGAAGAGAATAGTATCAAAGGTAACAACACAACACCAGAAGAATAATAATAATGGCGAAGGTGATGATAAATACAAGAAGATTTTGAAGGGTATAACAGGAAGCATTGGACCTGGTGAAATTCTAGCACTTATGGGTCCTTCTGGTAGTGGAAAAACAACCTTGTTAAGAGTCATTGGAGGAAGATTACTTGACAATGTAAAGGGAAAAATCACCTATAACGATGTTCGATATACGCCAGCTGTCAAGAGGAGGATTGGATTTGTGACACAAGAGGATATTCTTTTTCCACAATTAACTGTTGAAGAAACGTTAGTCTTCTCCGCATTATTAAGGCTACCAACTAATATGAGCAAGCAGCAAAAATATGCAAAAGTGGACACCACTATCAAGCAGCTAGGCCTTGAGAGATGTCGCAACACAAAAATAGGAGGGGGATATCTGAAAGGCATATCAGGAGGGGAAAGGAAGAGAACAAGCATTGGTTATGAAATTCTTGTTGATCCTTCATTGCTACTACTTGATGAGCCAACTTCAGGCCTTGATTCCACCTCTGCAAACAAACTTCTTGTCACTCTTCAGGGACTTGCCAAGGCTGGAAGGACCATAATTACAACAATACATCAACCATCAAGCAGAATATTTCACATGTTTGACAAACTTCTTCTGATATCAGAAGGCTATCCGATATATTATGGTGAGGCTAGTGAATCTATGGACTACTTCTCTTCCTTAAGGTTCATGCCGGAGATTCCAATGAATCCGGCCGAGTTCTTGCTTGACTTGGCCACTGGACAAGTCAATGACATAAGTTTTCCATCCGAAGTTTTGCATGGGCAAGACCAACCAACTACTGACCCCTCTAAAGCAGTTACCAATTATCTAAAAGTGAAGTATAAAGCATTGTTGGAGCCAAAAGAAAAGGAAAACCATGGAACAACGACGACATCTGAACATCTTCAACAAGCAATTCAAGTTAAGAAGGAGTGGACATTGAGTTGGTTGGACCAATTTGTGATTCTCTCTAGAAGAACATTCAGAGCAAGATGCCAAGACTATTTGGATAAGCTAAGGCTAGTTCAAGCACTTGGCATTGCACTCTTGTTAGGACTACTTTGGTGGAATTCTTCAACCAACACCGAGGCTCAACTCAGAGATCAGGTTGGTTTAATGTTCTACATATGTATATTCTGGACATCTACATGTATATTTGGAGCAGTGTACGTGTTTCCATTCGAAAAGATATACTTGATAAAAGAAAGGAAAGCAGATATGTATAGATTAAGCGTATACTACGCTTGCAGCACTTTGTGTGACATGGTGGCACATGTTCTCTATCCCACTTTCTTCATGATCATTGTCTACTTCATGGCTGCGTTCAAGAGGACTCTCGCTTGCTTCTTCTTGACTCTCTTCTCTGTTCTCTTAATCGCCGTAACCAGTCAGGGAGCTGGAGAATTATTTGGAGCTGCAGTTATGAGTATTAAAAGAGCAGGCATGGCTGCTTCTTTGGTGCTTATGTTGTTCCTTCTTACTGGTGGCTACTATGTCCAGCACATACCAAAGTTCATGCAGTGGTTGAAGTATTCATCCTTCTTATTCTATGGATTCAGGCTTCTTCTAAAAGTACAGTATTCAGGAGATCAATTATATGACTGTGAAAGTGAGGGAGGGTGCAGACCCTTACAAAGTTCACCATCATTTAGCACTGTTAACTTGAAAGGTGGCTGGAAAGAAGTTTGGGTTGTGCTAGCCATGGCTATGTGCTTCAGGTTCTTGGCTTACATCTGCCTCCGTAGAAGAATTGATGCCTATAAATAA 2094 0.404 MEIRREDDEIEDISRMSPPLVGSMRIEGCNNNNHKKEFMSHSYFHNKCSDEIDIQIDDSSFNQNRPLPIYLKFEDVEFRVRNNTRAGSNNPLKRIVSKVTTQHQKNNNNGEGDDKYKKILKGITGSIGPGEILALMGPSGSGKTTLLRVIGGRLLDNVKGKITYNDVRYTPAVKRRIGFVTQEDILFPQLTVEETLVFSALLRLPTNMSKQQKYAKVDTTIKQLGLERCRNTKIGGGYLKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLLVTLQGLAKAGRTIITTIHQPSSRIFHMFDKLLLISEGYPIYYGEASESMDYFSSLRFMPEIPMNPAEFLLDLATGQVNDISFPSEVLHGQDQPTTDPSKAVTNYLKVKYKALLEPKEKENHGTTTTSEHLQQAIQVKKEWTLSWLDQFVILSRRTFRARCQDYLDKLRLVQALGIALLLGLLWWNSSTNTEAQLRDQVGLMFYICIFWTSTCIFGAVYVFPFEKIYLIKERKADMYRLSVYYACSTLCDMVAHVLYPTFFMIIVYFMAAFKRTLACFFLTLFSVLLIAVTSQGAGELFGAAVMSIKRAGMAASLVLMLFLLTGGYYVQHIPKFMQWLKYSSFLFYGFRLLLKVQYSGDQLYDCESEGGCRPLQSSPSFSTVNLKGGWKEVWVVLAMAMCFRFLAYICLRRRIDAYK 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121086g00002 697 CDD ABCG_EPDR 115 324 - -
Stsc121086g00002 697 Pfam ABC transporter 120 270 IPR003439 GO:0005524
Stsc121086g00002 697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 336 IPR027417 -
Stsc121086g00002 697 Pfam ABC-2 type transporter 428 636 IPR013525 GO:0016020|GO:0140359
Stsc121086g00002 697 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 71 342 IPR003439 GO:0005524
Stsc121086g00002 697 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 52 686 - -
Stsc121086g00002 697 SMART AAA_5 129 320 IPR003593 GO:0016887
Stsc121086g00002 697 FunFam ABC transporter G family member 22 107 336 - -
Stsc121086g00002 697 Gene3D - 107 337 IPR027417 -
Stsc121086g00002 697 Pfam ABC-2 type transporter 299 359 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121086g00002 Stsc-Chr121086 8325 14295 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121086g00002 118 303 Calmodulin-binding Proteins AT2G36910 30.526 1.27e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121086g00002 K05681 - gmx:100806094 1072.77