LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc121085g00011	ATGTGGCATGAGTATGCTGATGTGTTCAAGGGTGGTTTGAAATTGAATGGGGAAATGATTTGTGATTTTGGCTTTTGGGCTTGCAAAGATCGGCAACAGGTCACAAGATTTGAAGGCAAATTTGGGTATTTTGCTCCTGAATATTTGACACATGAAATGATAAATGAGAAAACAGATGTTTATGGATTCGGGATCCTGTTGCTGGAGATTTTAACTGAAGGGTTGAGGCATAGAGATGGGGACTATAGATATTCCTTAACCCCAACAAGATCTGAATACTCCTCGTCATCAAGAACACCACCACCCTTTCCCATTGGATCCCATGATCATGATGATGATACTCCAGCAGCAGTCACTTGTTTAAGCTTGAAATGGAAAAATATCTTTAAGCCATGGAAAAAATCATCATCACCAGCAACTACTACTATCCCTCCTCCTTCTCCTTCGCCTCTTTCTGATGATCAGCCAAACCAAGACCACCGCGGCTTTAATTCTCGGCTCATCACTTTTAGATCTTTTGAAATTCGACGTGCAACAAACAATTTTAGCGAAGAGAATTTAATTGGAAGAGGTGGGTATGCTGATGTGTTCAAGGGTCGTTTGAATGGGGAAATGGTAGCTATAAAGAGATTGAACAACAAATGCACTAACAATAATAGCAGAAACACATCATCATCAAACTTTCTGAAAGAGCTTAACATAATTTCCCACATCGACCATCCTAATTGTGCCAAGCTTATTGGATGCAGTTCAGACAAGGAATCCTGCCTCGTCTTCCAACTTTCTCCACTCGGAAGTTTAGCTTCTGTTCTCCATGGTCCAAATAGAGAGATATTAAGTTGGAATAGAAGGTATAATATTGCTCTGGGAATAGCTAGAGGGTTGTTGTATTTGCATGATCATTGTGACAGGCCAATCATCCATAGAGATATTAAATCTGATAATATTCTGCTCACCAAAGATTTTGAGCCACAGATTTGTGATTTTGGGCTTGCAAAGTGGTTGGAGCCAGATGCTGATCGGCAACAGGCCACAAGATTTGAAGGCACATTTGGGTATTTTGCTCCTGAATATTTGACGCATGGAATAATAGATGAGAAAACAGATGTTTATGCATTCGGGATCCTATTGCTGGAGATTTTAACTGGACGTAAGGCTTTGGATTATTTGCAACAAAGCATCTTGATATGGGCAAAGCCATTGATGGAGGATGATGATAATGTTAAGGAGCTTGTAGACCCATCACTTGGTGATGATTATGAGATAGAAGAGGTTGAACGTGTTATTTTGACTGCTTCTCTGTGTGTTGAGCAATCTCCATTCTTGCGCCCTCGCATGGTTCAGACTCTGCAATTGCTCAAATCTGAAGAAGAAGATGATGACGATGACATAGTCATGGAATTTGACTACGATGGAACTCCAAGGCCCCTTACTTAG	1437	0.4064	MWHEYADVFKGGLKLNGEMICDFGFWACKDRQQVTRFEGKFGYFAPEYLTHEMINEKTDVYGFGILLLEILTEGLRHRDGDYRYSLTPTRSEYSSSSRTPPPFPIGSHDHDDDTPAAVTCLSLKWKNIFKPWKKSSSPATTTIPPPSPSPLSDDQPNQDHRGFNSRLITFRSFEIRRATNNFSEENLIGRGGYADVFKGRLNGEMVAIKRLNNKCTNNNSRNTSSSNFLKELNIISHIDHPNCAKLIGCSSDKESCLVFQLSPLGSLASVLHGPNREILSWNRRYNIALGIARGLLYLHDHCDRPIIHRDIKSDNILLTKDFEPQICDFGLAKWLEPDADRQQATRFEGTFGYFAPEYLTHGIIDEKTDVYAFGILLLEILTGRKALDYLQQSILIWAKPLMEDDDNVKELVDPSLGDDYEIEEVERVILTASLCVEQSPFLRPRMVQTLQLLKSEEEDDDDDIVMEFDYDGTPRPLT	478

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc121085g00011	478	ProSitePatterns	Protein kinases ATP-binding region signature.	188	209	IPR017441	GO:0005524
	Stsc121085g00011	478	MobiDBLite	consensus disorder prediction	88	102	-	-
	Stsc121085g00011	478	Gene3D	Transferase(Phosphotransferase) domain 1	14	124	-	-
	Stsc121085g00011	478	Pfam	Protein kinase domain	183	388	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc121085g00011	478	Pfam	Protein kinase domain	19	73	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc121085g00011	478	SUPERFAMILY	Protein kinase-like (PK-like)	160	453	IPR011009	-
	Stsc121085g00011	478	ProSiteProfiles	Protein kinase domain profile.	182	465	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc121085g00011	478	PANTHER	OS08G0249100 PROTEIN	20	72	IPR046958	-
	Stsc121085g00011	478	Gene3D	Transferase(Phosphotransferase) domain 1	263	472	-	-
	Stsc121085g00011	478	Gene3D	Phosphorylase Kinase; domain 1	161	261	-	-
	Stsc121085g00011	478	SMART	serkin_6	182	453	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc121085g00011	478	MobiDBLite	consensus disorder prediction	88	111	-	-
	Stsc121085g00011	478	SUPERFAMILY	Protein kinase-like (PK-like)	19	83	IPR011009	-
	Stsc121085g00011	478	MobiDBLite	consensus disorder prediction	133	161	-	-
	Stsc121085g00011	478	FunFam	receptor-like cytosolic serine/threonine-protein kinase RBK2	263	465	-	-
	Stsc121085g00011	478	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	306	318	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc121085g00011	Stsc-Chr121085	40897	48097	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc121085g00011	19	72	Trihelix Transcription Factor Family	AT1G70460	40.351	7.07e-08	53.1

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Stsc121085g00011		Pkinase	1.6e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc121085g00011	-		-	aip:107646486	562.762