Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121084g00004 ATGCCTGTGCTGCGTAGCGGAGCGCGCAGGGGCCGGGCAGCAGCGAAGAAGAAGCAGCAAGAACAGCAGGAGGAGCCACAGCCACAGCAGTTACAACCGCAGAATCCGGTGGTGGAAGGGGAAGCGATTGCTACGAGAACAAGGAGGCGTCGTGCGGCGGCGGCGGCAGGAGAGTTTGTTGTGCCAAAGAATAACAAGAAGAAGAAGGAGGAGGAGCAGGCGAAGGTCAATGAGAAGGTAGTTGTTGAGAAGGAGGAAGAGAAGAAGGGAGTTGAGGTTTGTGAAGGAGCGGAGAAAGAAGACGTAGGAGAGAAACAGATGGATGATTTCGACAGCGGCGGCCGCAGCAATAAGGCCAATGCTGCTGAAGATGAGGGCAGCACTGCTCCACTTCCAGAGAAGATTCAAGTAGGTGGTTCTCCTTTGTATAAATTAGAAAGAAAACTTGGTAAGGGTGGATTTGGTCAAGTATATGTTGGTCGGCGTATTACTGGTGGGAATTTGAATGAGAGAATTGGACCTGGAGCTGTAGAGGTTGCGTTAAAATTTGAGCATAGAAGTAGTAAAGGATGTAATTATGGACCACCATACGAGTGGCAAGTATACAACACTCTTGGTGGCAGTCATGGTGTGCCTCATGTACATTACAAGGGAAGGCAAGCAATATTTCTCTTATTCTTGTGGGACGTTTGGAATAACAACTCTCACAGCATGTCCACAGAAATGGTTGCATGTATTGCCATTGAGGCAATATCCATCTTGGAAAAGATGCACTCTCGAGGGTATGTGCATGGGGATGTGAAGCCTGAAAATTTTCTGCTTGGTCCTCCTGGGACACCTAATGAGAAGAAATTGTTTCTTGTGGATCTTGGATTGGCTACTAAATGGCGAGACAGTACAACGGGTTTGCATGTAGAATATGACCAAAGGCCGGATGTTTTCAGGGGCACTGTCCGATATGCTAGCGCAAATGCACATTTAGGGAGAACTGGAAGCAGGAGGGATGATTTGGAATCTCTAGCTTATACACTGATTTTTCTTCTTCGAGGTCGTCTTCCTTGGCAGGGTTTCCAGGGAGAAAATAAAGGATTTCTTGTCTGCAAGAAGAAGATGGGGACGCCTCCAGAAAGCTTATGTTGCTTTTGTCCCCATCCTTTTAAACTATTTGTTGAACATGTTGTGAACTTAAAGTTCGATGAAGAACCTAACTATGCAAAATACATTTCTTTCTTCGATGGAATTGTTGGTCCAAATCCAGATATCAGGCCGATTAATACAGAAGGCGCACAAAAGCTCATTGGTCACAAGAGAGCCCGGCAGGCAATGGAAGATGATGACGATGAACAACCCAAAAAGAAGTACCGTATGGGTTTGCCAGCAACTCAGTGGATAAGTGTTTACAATGCTCGTAGGCCTATGAAACAAAGATATCACTACAATGTGTCTGATCAAAGGCTATCTCAGCACATTGAGAAAGGGAATGAGGATGGTTTATATATTAGCAGTGTTGCTTCATGTCAGAACCTGTGGGCCTTAATAATGGATGCAGGAACAGGTTTCACTGCCCAAGTGTATGAACTTTCCTATTACTTTCTCCATAAGGAATGGATCATGGAGCAGTGGGAAAAGAATTATTATATCAGCGCAATTGCTGGAGCGGCAAATGGAAGCTCGCTAGTAGTGATGTCTAAGGGCACACAGTATCTGCAGCAATCATACAAAGTTAGTGATTCATTTCCTTTCAAGTGGATCAACAAAAAATGGAGAGAGGGCTTTTATGTCACTTCAATGGCTACCTCATTGAACAGATGGGGAGTAGTTATGTCTCGTGGTGCAGGATTTTCTGACCAGGTGGTTGAGCTAGATTTCTTGTACCCTAGTGAAGGGATTCACAAGCGGTGGGATTGTGGATACCGAATCACCTCAACTGCCGCAACATGGGATCAAGCGGCTTTTGTCCTGAGCGTACCCAGGAAGAAGCCGACAGATGAAACTCAGGAAACACTTAGGACTTCTGCCTTTCCTAGTACACATGTTAAGGAGAAGTGGGGGAAGAACCTCTACATTGCTTCTATATGCTATGGACGTACAGTTTCTTAA 2100 0.4552 MPVLRSGARRGRAAAKKKQQEQQEEPQPQQLQPQNPVVEGEAIATRTRRRRAAAAAGEFVVPKNNKKKKEEEQAKVNEKVVVEKEEEKKGVEVCEGAEKEDVGEKQMDDFDSGGRSNKANAAEDEGSTAPLPEKIQVGGSPLYKLERKLGKGGFGQVYVGRRITGGNLNERIGPGAVEVALKFEHRSSKGCNYGPPYEWQVYNTLGGSHGVPHVHYKGRQAIFLLFLWDVWNNNSHSMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPNEKKLFLVDLGLATKWRDSTTGLHVEYDQRPDVFRGTVRYASANAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGFQGENKGFLVCKKKMGTPPESLCCFCPHPFKLFVEHVVNLKFDEEPNYAKYISFFDGIVGPNPDIRPINTEGAQKLIGHKRARQAMEDDDDEQPKKKYRMGLPATQWISVYNARRPMKQRYHYNVSDQRLSQHIEKGNEDGLYISSVASCQNLWALIMDAGTGFTAQVYELSYYFLHKEWIMEQWEKNYYISAIAGAANGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTSMATSLNRWGVVMSRGAGFSDQVVELDFLYPSEGIHKRWDCGYRITSTAATWDQAAFVLSVPRKKPTDETQETLRTSAFPSTHVKEKWGKNLYIASICYGRTVS 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121084g00004 699 PANTHER CASEIN KINASE-RELATED 136 664 - -
Stsc121084g00004 699 CDD STKc_CK1 143 411 - -
Stsc121084g00004 699 MobiDBLite consensus disorder prediction 1 135 - -
Stsc121084g00004 699 ProSiteProfiles Protein kinase domain profile. 143 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121084g00004 699 SUPERFAMILY Protein kinase-like (PK-like) 143 415 IPR011009 -
Stsc121084g00004 699 MobiDBLite consensus disorder prediction 62 112 - -
Stsc121084g00004 699 Pfam Protein kinase domain 234 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121084g00004 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Stsc121084g00004 699 Coils Coil 66 88 - -
Stsc121084g00004 699 Gene3D Transferase(Phosphotransferase) domain 1 101 458 - -
Stsc121084g00004 699 SMART serkin_6 143 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121084g00004 699 ProSitePatterns Protein kinases ATP-binding region signature. 149 182 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121084g00004 Stsc-Chr121084 34521 40128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121084g00004 91 374 AGC Kinase Gene Family AT3G08730 23.102 1.61e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Stsc121084g00004 Pkinase 1.7e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121084g00004 - - qsa:O6P43_018208 1126.31