Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121084g00001 ATGGAGGTGCCGGAATACTTCGTCGGTGGCTATTACGGCGCCGGAGGAGACCAATTCTCCACGGAGAAGAGGCATGGCGTTGGCGCTGGAGACCAGAAGCACGGTGGCTGTGGCGGCGGCGGTGAGCCGTTTGCCATTGACGACCTACTCGACTTCTCCAACGCTGACGCCATCATGTCCGACGGATTCTTTGAAAATGTCGCCGGAAACTCCTCCACCGACTCGTCAACCGTCACCGCGGTTGACAGCTGTAACTCCTCCGTATCCGGTGGCGACAACCATTTCCCTCCCGGCATTGTCCCTCGCGCATTCTCCTCCGGCGATCCACAATTCTCTGGCGGTGAACTCTGCGTTCCGTACGATGACATGGTGGAACTGGAGTGGCTCTCGAACTTCGTGGAGGACTCGTTCTCCACAGAAGAAGATTTGAAGACGCTGCAGCTTCTCTCCGGCGGTGGCGCCGCCGCCATCAACGGCAGAAAACCTCAGACTCCGGAGTCATCATCTTCCTCGGACAACGCGCTCCATCCTCCATTCGACACCGCGAGAAACGCACCGTTTCTTCTTCATCAGGAGACACCGCTCCCAGGGAAAGCCCGCAGCAAGCGCTCACGCGCGGCGCCGGGGGACTGGTCCACGCGCCTGCTTCACCTCTCGACTCCTCCGCCGCCTGCGGGGGAGCATAAGCCTCCGACACCGAAAGTGGCGGCACCGACGACGACGAAGAGGAGGGAGGCGAATGCGGAGTGTTCGGGGAGAAAGTGTCTACACTGCGGCGCTGATAAGACGCCACAATGGCGAACAGGGCCCATGGGCCCAAAGACTCTGTGCAACGCTTGCGGCGTGAGGTTTAAGTCGGGCCGTCTTGTGCCAGAGTACAGGCCCGCAGCAAGCCCAACGTTCGTTTCAACGAAGCATTCGAATTCTCATCGGAAGGTTCTGGAACTGAGGAGGCAGAAGGATATGCAGCGGCAGCAACAGCAGCAGCAGCAACTGATGAGTCAAACTTCGATTTTCGGCGTATCCAACGGTGGAGATGAGTTCTTAATCCATCATCATCATCATCACCATCATCAACAACAACACCATTGTGGCCCTGATTTTAGGCATGCTATCTAG 1119 0.58 MEVPEYFVGGYYGAGGDQFSTEKRHGVGAGDQKHGGCGGGGEPFAIDDLLDFSNADAIMSDGFFENVAGNSSTDSSTVTAVDSCNSSVSGGDNHFPPGIVPRAFSSGDPQFSGGELCVPYDDMVELEWLSNFVEDSFSTEEDLKTLQLLSGGGAAAINGRKPQTPESSSSSDNALHPPFDTARNAPFLLHQETPLPGKARSKRSRAAPGDWSTRLLHLSTPPPPAGEHKPPTPKVAAPTTTKRREANAECSGRKCLHCGADKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSTKHSNSHRKVLELRRQKDMQRQQQQQQQLMSQTSIFGVSNGGDEFLIHHHHHHHHQQQHHCGPDFRHAI 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121084g00001 372 Pfam GATA zinc finger 255 288 IPR000679 GO:0006355|GO:0043565
Stsc121084g00001 372 FunFam GATA transcription factor 244 331 - -
Stsc121084g00001 372 ProSitePatterns GATA-type zinc finger domain. 255 280 IPR000679 GO:0006355|GO:0043565
Stsc121084g00001 372 PANTHER GATA TRANSCRIPTION FACTOR 35 330 - -
Stsc121084g00001 372 MobiDBLite consensus disorder prediction 154 181 - -
Stsc121084g00001 372 Coils Coil 371 372 - -
Stsc121084g00001 372 SMART GATA_3 249 299 IPR000679 GO:0006355|GO:0043565
Stsc121084g00001 372 MobiDBLite consensus disorder prediction 161 177 - -
Stsc121084g00001 372 ProSiteProfiles GATA-type zinc finger domain profile. 249 285 IPR000679 GO:0006355|GO:0043565
Stsc121084g00001 372 MobiDBLite consensus disorder prediction 353 372 - -
Stsc121084g00001 372 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 252 312 - -
Stsc121084g00001 372 MobiDBLite consensus disorder prediction 193 249 - -
Stsc121084g00001 372 Gene3D - 250 336 IPR013088 GO:0006355|GO:0008270
Stsc121084g00001 372 CDD ZnF_GATA 254 301 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121084g00001 Stsc-Chr121084 9991 11935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121084g00001 37 372 C2C2-Gata Transcription Factor Family AT4G32890 43.516 1.36e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc121084g00001 GATA 2.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121084g00001 - - aip:107619293 670.233