Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121083g00005 ATGGGGAAGCCGACAGGGAAGAAGCATCAGAATCAGAATCAGCAGAGTAATCCTCCCTCGGCGACTTCACGGGCCGCCGCCTCAACTTCCAAGCCCAATTCGAAGCCCAAACCTGCCGCCTTCGATGAAGACACAGCGATGTTCATAAGCATGTCTCAGGAGCTTCGTGAAGAAGGCAACCGCCTCTTCCAAAAGAAGGACCACGAGGGCGCCATGTTAAAGTACGAAAAAGCCCTCAACCTTCTCCCACGCAACCACATCGACGTTGCCAACCTCCGCACCAGCATGGCCCGATGCTACACGCGCCTCGGCCTCGGCGAGTACCCACGCGCCATCAACCAGTGTAACCTCGCTCTTCAGGTCTCCCCTAAGTACACTAGGGCTCTCTTGAAGCGTGCCAAGTGCTACCACGCGTTGAATCGCTTGGACTTGGCTTTGAGGGATGTTCGGGCCGTGTTGGGCCTCGAGCCCAATAACCTTGCCGCGCTGGAGTTCTTTGAGGGATTGAGGAAGGTCATGGAAGAGAAAGGGGTGGTTCTTGAGGAAGAAGAGGAGGTTGATTTAGATTCTGGTGGTGGTGCCAAGGGGACGCCTGCTACGTGTTTGAAGAAAGTTCCAAGAGAGAAATCACAGAAGAAGAAGAAAGGGAAGAGGGTTGAGGAGGAGGAAAAGGCCTCTGAGGATAAGGATAAGGTGGTGGTTGTTGAGGAGTGCGCGGATGGTGATGCCGTGCAGGACAAGGAAGTGGTTACCAGGACGGAAGAAAAGGTTGTGAAAGAGGAGAAGCTTGTGGAGGAAGAAAAGGGAGTGGCGAGGACGGTGAAGTTGGTGTTTGGAGAGGATATTAGATGGGCGCAGCTTCCGGCGAATTGTAGTGTGAGGTTGGTGAGGGATATAGTTAGGGATCGGTTTCCGGGTTTGAAGGGTGTTCTTGTCAAGTATAGGGATGAGGAGGGTGATTTAGTTACGATTACTACTACTGATGAGCTGAGGTTAGCTGAGACTGCTGTTCATGATAATGGGTCAATTCGGTTTTATATTAGTGAGGTTGATTTGGACCAAGAGCCTTGTTATGATGGAGTAACCAATGGGGATTACAAACAAGAAGATGGTAGGAAAAGGAATCTGTATGATGGTGTTGAGAATGGAGGTGTGGGAGATATGGTTTTGGAAAATAAAAATAATAAGATGACTGCTGTGGAGGAATGGATTGTGCAGTTTGCGAGGCTGTTCAAGAACCATATTGGGTTTGATTCAGATTCTTATCTAGATATTCATGAGATGGCAATGAATCTCTATTCAGAAGCAATGGAGGATACGGTAACAGGCGATGATGCTCAAGAATTATTTGAGATTGCTGCAGACAAATTTCAAGAGATGTCAGCATTGGCAATGTTTAATTGGGGGAATGTTCACATGTCCAAGGCAAGGAACAGAGCTTTCTTTTCAGAGGATGGGTCAAGAGAACCTTCTTTCGAGCATGTTAAAGCTGCATATGAGTGGGCTCTAAATGAGTATAAGAAAGCTGAGGTGAGGTATGAGGAGGCGTTGAAGATCAAACCGGATTTCTTTGAAGGATATCTTGCTCTTGGACATCAGCAGTTTGAGCAGGCAAGGCTATGCTGGTGTTATGCATTGGCATGCAAAGTGGATTTAGAAGCTGGTCCTTCCGAGGAGGTTCTTCAGCTCTACAACAAGGCAGAGGACAGCATGGAGAAAGGGATCCTGATGTGGGAGGAGATTGAGGAGCAGCGATTAAATGGATTATCCAAATCCGATAAATATAGAGCAAAGTTAGAGAAAATGGGCATGGATGGGCTTCTCAGGGATATTTCTTCCGATGAAGCTTCGCAGAAGGCAACAAAGATGAAGTCACAAATATATCTTTATTGGGGTACCTTATTGTATGAACGTTCTGTTGTGGAATATAAGCTAGGCCTACCAACATGGGAGGAATGCTTGGAGGTTGCCGTCGAAAAGTTTGAGCTAGCTGGAGCTTCAGCAACGGATGTAGCTGTCATTATAAAGAATCACTGCTCTCATGAAACAGCACTTGAAGGGTTCAAAATTGATGAGATAGTACAGGCATGGAATGAGATGTATGATGCTCAAGGCTGGCTGTTTAGTGCTCCATCATTTCGACTTGAACCATTGTTTCGTCGGCGCATTCCTAAACTGCATTACATCTTGGAGCAACTTTAA 2202 0.4714 MGKPTGKKHQNQNQQSNPPSATSRAAASTSKPNSKPKPAAFDEDTAMFISMSQELREEGNRLFQKKDHEGAMLKYEKALNLLPRNHIDVANLRTSMARCYTRLGLGEYPRAINQCNLALQVSPKYTRALLKRAKCYHALNRLDLALRDVRAVLGLEPNNLAALEFFEGLRKVMEEKGVVLEEEEEVDLDSGGGAKGTPATCLKKVPREKSQKKKKGKRVEEEEKASEDKDKVVVVEECADGDAVQDKEVVTRTEEKVVKEEKLVEEEKGVARTVKLVFGEDIRWAQLPANCSVRLVRDIVRDRFPGLKGVLVKYRDEEGDLVTITTTDELRLAETAVHDNGSIRFYISEVDLDQEPCYDGVTNGDYKQEDGRKRNLYDGVENGGVGDMVLENKNNKMTAVEEWIVQFARLFKNHIGFDSDSYLDIHEMAMNLYSEAMEDTVTGDDAQELFEIAADKFQEMSALAMFNWGNVHMSKARNRAFFSEDGSREPSFEHVKAAYEWALNEYKKAEVRYEEALKIKPDFFEGYLALGHQQFEQARLCWCYALACKVDLEAGPSEEVLQLYNKAEDSMEKGILMWEEIEEQRLNGLSKSDKYRAKLEKMGMDGLLRDISSDEASQKATKMKSQIYLYWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGASATDVAVIIKNHCSHETALEGFKIDEIVQAWNEMYDAQGWLFSAPSFRLEPLFRRRIPKLHYILEQL 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121083g00005 733 CDD PB1 273 348 - -
Stsc121083g00005 733 Gene3D - 263 350 - -
Stsc121083g00005 733 SUPERFAMILY TPR-like 454 659 IPR011990 GO:0005515
Stsc121083g00005 733 Pfam PB1 domain 272 345 IPR000270 GO:0005515
Stsc121083g00005 733 ProSiteProfiles TPR repeat profile. 126 159 IPR019734 GO:0005515
Stsc121083g00005 733 MobiDBLite consensus disorder prediction 1 41 - -
Stsc121083g00005 733 PANTHER PROTEIN CLMP1 1 731 IPR044517 -
Stsc121083g00005 733 SUPERFAMILY CAD & PB1 domains 270 359 - -
Stsc121083g00005 733 SMART PB1_new 271 350 IPR000270 GO:0005515
Stsc121083g00005 733 Gene3D Tetratricopeptide repeat domain 44 189 IPR011990 GO:0005515
Stsc121083g00005 733 SMART tpr_5 90 125 IPR019734 GO:0005515
Stsc121083g00005 733 SMART tpr_5 490 523 IPR019734 GO:0005515
Stsc121083g00005 733 SMART tpr_5 126 159 IPR019734 GO:0005515
Stsc121083g00005 733 SMART tpr_5 52 85 IPR019734 GO:0005515
Stsc121083g00005 733 MobiDBLite consensus disorder prediction 183 223 - -
Stsc121083g00005 733 Gene3D Tetratricopeptide repeat domain 419 608 IPR011990 GO:0005515
Stsc121083g00005 733 ProSiteProfiles PB1 domain profile. 271 350 IPR000270 GO:0005515
Stsc121083g00005 733 ProSiteProfiles TPR repeat profile. 52 85 IPR019734 GO:0005515
Stsc121083g00005 733 SUPERFAMILY TPR-like 53 539 IPR011990 GO:0005515
Stsc121083g00005 733 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121083g00005 Stsc-Chr121083 30488 32823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121083g00005 40 159 Calmodulin-binding Proteins AT3G25230 27.132 4.81e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121083g00005 K26538 - qsa:O6P43_015720 941.799