Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121081g00008 ATGAAGCTCAAAACATCGTCCAAACCAAAGCTTGACGTCGATGAAAGGGTTGAGGTGAGGAGCATGGAGGAAGGCTTCCTAGGTTCATGGCACCCGGGGAAAGTTGTCAATTCGGCGAAGCTGCAGCGCCATGTCAAATACGATAACTTATTACTTGATGATGAGGTGAATTACCTTGTGGAAAAGGTGAATGTTCCAAAGGTGTTGGATGGCGACAGCGATTCTTCGAATTGCAATGTTCGTGGTTGGATTAGGCCAGTGCCTCCTATGAGGGAATTTGAAAGTAGGGAACTTAAATATGGTCTGTGTGTTGATGTGTACCATGAGGAAGCTTGGTGGGAAGGGGTTATATTTGATCATTGTGATGGAATGGAGGAGAGGAGTGTATTATTTCCGGATTTGGGTGATGAGATGAAGATTGAAGTTCATCAAATGCGGATAACTTATGATTGGGATGAGGTTACCGGGAAGTGGCTGCTGAGAGGGAACTGGGTTTTCCTTGAACTTATTGAGGAGTTTGAGAGGAAATTGTTTGTTCCAGTTTCAGTGAAGCAAGTTTGGTATGATGTAAGGACCAAACCGGACTTTGCCAAGATTAGGGAATGGACTTTCAGCGAGAAGCACTTATGGAAAGACATGGTAATGGAGGTACTTGGTGACTACTTAAATGTTACATTAAGAGAAGTTTGCTCCTTCTTAGACCTTCCAAGGAGTTTATTGAATGTAACACCAGAGAAGGAGTTAGTTGAACCTGGTGCTGATGTTGAATTCAATTATGAAGTTGATGTTGTGAACTCTGCTGGCCAATCGAGTAGCAATTGTATCGCAACTGCTCATTGTGACGGCACCCCTGATAATGCATTTAGTTCTGATGATGTGATTGCTGAACTCCCTATGGAAGAAGGTGAGTCATCAAATTTGTTGAACGCTGTTCAAGATAGATATAGTATGGTCAAATCTGTCCCTCAGAAAGAAGTTTTGGTGCAGAAAGAAAAACGTAAAAAGCTTCGCAACTTAACTGTAGATTGGAAACCTCTCAATTTGTCTGAAGTTGAGTTATGTCCTGATGCTGTTGAAAAATATGCACAGTTTGGTAAGAGTGCTAGTTTGGAAAAAGCACGCAAACAACTTGTGCATCTTGGATGGGAAATTGAGTGGGCAAAGTGTAAAACACTTGACGACAACTACAGGATCAGGTACAAGTATAGGCCGCCTGATAAAGATGGTGTTTACACCTCTCTCAGTTCAGTTTGTAAGTATCTTGCACGGAAGTCAGACATGAGCCTCTTGCCTTCCCAAAATGATAAGAGTTTGATTCAACCTACACCTGACAACCATCTTGCACCTATTCTTATTGAGCCGCCTCCTCTGGCTGAAGTTGCAGATGAACCCGAGTTTTGTCCTCAAGCTGTTTTAGAATATAGCTTGAATAGATCTGCAATGCGAGGGCCTGACAGGACAACTTGTATTTCCAAAGCAAGGAGGCATCTTTTGGCTGAAGGATGGGTCTATAAGTATGTAGACCCAAGTAACAAAAGAAAGGGGTTTATGTATACGCCTCCGAACAAGGGAAGAAATATCTTTTCACTATGTGCAGCATGCCATTATTGTATTCGACAAAATGTTTCTAAATGGACCATGCTCGGAATGCAAGCTTTGAGTGCACAGGATAATGTTGAGCAGATTTGGAGTGCCAGTTTATTACAGAAGGCATCCCAATGGCTTCAAGGGAAACAGATGGTACCTGCCACTGAAGTTGTAGCTTCAAGCGGATCAACCAATAATCGGAAGCGGAAACTCTTGGAAAATACAAAGCCTGGCTCATCTAAGCGCCGAAGCAATGGATTACCTCGACGGGTACTACGATCAAATAAAAGGGTGCAAAAGGTGTCCGTGCCTTCTTTGTCACACCAGAAACCTCAGAATGTACTGTCTTGGTTGATAGACAACAACATTCTTTTGCCAAGGTCTAAGGTTTCTTACAAGCGAAAGGGTAGGCTCTATTCAGCTGAAGGGAGAATAACCAGTGATGGAATCAAGTGTAACTGTTGTCTGAAAGTATATAGTCTTTCTGGCTTCGAAAGTCATGCTAGTGGCTTTAGTACCAGCAGACCTGCTGCATGTATCATTTTAGAAGATGGTAGATCACTATTAGATTGCCTCATAAAAACAATGCAAGATCATATGACAAGGGAAGCTAATGCAAAACCAAAGGAAGATTTACTTCAAGGCGAGAATGACAATATTTGTTCTGTTTGCCACTTTGGTGGTGATCTAATTTTATGCGACCAATGCCCATCTTCATTTCATGGGATATGTCTAGGATTGGAGGATGTCCCTGAAGGTGACTGGTTTTGCCCATCATGTCGATGTGCAGTTTGTGGCGAAAGTAAAATAGAAGGAGCAGAGGAGGAAGATTTCCTTGTTTGCCTTCAGTGTGAACATAAATGTGCCTCAGGGTTAAAGATGCAACTAACTCTAGAAGATATAAGAAAAGCTGGTTCTGTGGAAGGGACTGTGAAAAGGTCAAAACTTAGTCGATTGAATTTCAGTGGTTTCTATACTGTACTTCTGGAGAGAAATGAAGAGCTGATAAGTGCAGCAACTATTAGGGTCTACGGAAAGAAGGTAGCAGAAGTGCCTCTTGTTGGTACCAGATTACAGTATCGTAGACATGGAATGTGCCGCATTTTGATGAATGAGCTTGAAAAGAGGCTCATGCAGCTGGGAGTGGAGAGGCTCGTTTTGCCAGCTGTTCCTAGTGTTGTCGAAACATGGACTGGTTGTTTTGGCTTTGTAAAGATGACAGAGTTTGAGAGATCACAATTCTTGGATAATACCTTTTTGGATTTTCAGGGTACCATCATGTGCCAGAAGCTGTTGATGAAGATTCCATCTCCGGATCCAGTTTTGTTAATAGAGTACCAACAAAAGACACAAGACGTTTTCCCTGAAACTAAGTTAAATTTCGACGCCGGTTCGGTCTCTGAAGTATTACACCAGGCAGAAGAAGCAGACAAAGGAGAGATACAGAATTCACAAATGCAACTTACTCTTGTTAGCAGCAATGATAATGGCAGTCATGGTGTCATTGAGCAAGTCACACCGAAACAGGTGAATAAACCATCTCCTGATGATCTTCAGTGGCAGAGCGCTATTGTAACACAAGCTCACAGTGATAATAATGGCTCATCATATAAGTGCTACAAAAGAAGGAAATACACCAAGTCACAGACACG 3239 0.423 MKLKTSSKPKLDVDERVEVRSMEEGFLGSWHPGKVVNSAKLQRHVKYDNLLLDDEVNYLVEKVNVPKVLDGDSDSSNCNVRGWIRPVPPMREFESRELKYGLCVDVYHEEAWWEGVIFDHCDGMEERSVLFPDLGDEMKIEVHQMRITYDWDEVTGKWLLRGNWVFLELIEEFERKLFVPVSVKQVWYDVRTKPDFAKIREWTFSEKHLWKDMVMEVLGDYLNVTLREVCSFLDLPRSLLNVTPEKELVEPGADVEFNYEVDVVNSAGQSSSNCIATAHCDGTPDNAFSSDDVIAELPMEEGESSNLLNAVQDRYSMVKSVPQKEVLVQKEKRKKLRNLTVDWKPLNLSEVELCPDAVEKYAQFGKSASLEKARKQLVHLGWEIEWAKCKTLDDNYRIRYKYRPPDKDGVYTSLSSVCKYLARKSDMSLLPSQNDKSLIQPTPDNHLAPILIEPPPLAEVADEPEFCPQAVLEYSLNRSAMRGPDRTTCISKARRHLLAEGWVYKYVDPSNKRKGFMYTPPNKGRNIFSLCAACHYCIRQNVSKWTMLGMQALSAQDNVEQIWSASLLQKASQWLQGKQMVPATEVVASSGSTNNRKRKLLENTKPGSSKRRSNGLPRRVLRSNKRVQKVSVPSLSHQKPQNVLSWLIDNNILLPRSKVSYKRKGRLYSAEGRITSDGIKCNCCLKVYSLSGFESHASGFSTSRPAACIILEDGRSLLDCLIKTMQDHMTREANAKPKEDLLQGENDNICSVCHFGGDLILCDQCPSSFHGICLGLEDVPEGDWFCPSCRCAVCGESKIEGAEEEDFLVCLQCEHKCASGLKMQLTLEDIRKAGSVEGTVKRSKLSRLNFSGFYTVLLERNEELISAATIRVYGKKVAEVPLVGTRLQYRRHGMCRILMNELEKRLMQLGVERLVLPAVPSVVETWTGCFGFVKMTEFERSQFLDNTFLDFQGTIMCQKLLMKIPSPDPVLLIEYQQKTQDVFPETKLNFDAGSVSEVLHQAEEADKGEIQNSQMQLTLVSSNDNGSHGVIEQVTPKQVNKPSPDDLQWQSAIVTQAHSDNNGSSYKCYKRRKYTKSQTR 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121081g00008 1080 MobiDBLite consensus disorder prediction 1056 1080 - -
Stsc121081g00008 1080 Pfam Agenet domain 15 89 IPR008395 -
Stsc121081g00008 1080 SMART PHD_3 749 790 IPR001965 -
Stsc121081g00008 1080 CDD Tudor_Agenet_AtDUF_rpt1_3 13 89 - -
Stsc121081g00008 1080 Gene3D - 834 966 - -
Stsc121081g00008 1080 PANTHER PHD FINGER PROTEIN 12 468 817 IPR042163 GO:0003714|GO:0045892
Stsc121081g00008 1080 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 854 941 IPR016181 -
Stsc121081g00008 1080 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 797 967 IPR000182 GO:0016747
Stsc121081g00008 1080 Pfam Tify domain binding domain 672 722 IPR032308 -
Stsc121081g00008 1080 Pfam PHD-finger 749 791 IPR019787 -
Stsc121081g00008 1080 ProSiteProfiles Zinc finger PHD-type profile. 747 792 IPR019787 -
Stsc121081g00008 1080 SMART agenet_At_2 96 153 IPR014002 -
Stsc121081g00008 1080 SMART agenet_At_2 9 71 IPR014002 -
Stsc121081g00008 1080 MobiDBLite consensus disorder prediction 586 620 - -
Stsc121081g00008 1080 CDD NAT_SF 856 916 - -
Stsc121081g00008 1080 SUPERFAMILY FYVE/PHD zinc finger 726 790 IPR011011 -
Stsc121081g00008 1080 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 734 833 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121081g00008 Stsc-Chr121081 57025 62974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121081g00008 20 816 PHD Transcription Factor Family AT5G58610 33.333 3.16e-131 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc121081g00008 Agenet 4.4e-14 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121081g00008 - - aip:107644722 1215.68