Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121080g00003 ATGTTCCTTGGTTATGCCGGGAGCGAAAGCCAAAGGGACTATGCATGGGTGAAGCATGGAATGATTTTTCCATTTATGGATTATGTAGACAGGTTTCAGGGGCAGTCTGAACTTACTTCCTACGATTCCTCTGATTTCCAAATGGCAATAGAGGAGGCATTTTTGGCAGACCAGGGCTTCACGGAGAAGTTGATAGCTGATATAAATGCAGCAGCAGGTAATGCTGGATTTGATGATACTATTCTCAGGGCCCTTCATAGGGTCACTGGTTCAAACCAGTATGCAGGATATCACTTTCTGAATCAGGATTTATTAGACACCAGACCCTGTGAAGCCTGTGGGTTGCGCCTTCCGTTCAAAATGTCAAAGAAATTGAAGGGTTTGGCTCCCAATGGAAAATTCCTGTGTAAAACATGTGCTAGGTTAACAAAATCAAATCATTATTGTGGGATATGCAAGAAAGTTTGGAATCATTCAGATAGTGGAAGTTGGGTGCGCTGTGATGGATGTAAAGTGTGGGTGCATGCGGAATGTGACAAAATTTCTCGAAACCATTTCAAGAATCTTCAGGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATCTAGAAAAATCACATCCAAGAGTCAAGTCGAACAGAAAAAACGGACAGCTAGGAGGGCTTCCAAATAAGGTCGCTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTTCAAGCCTTCACTTAGTTGTTTGCAAGTGTGGTTTTTGTGGAAATGAAAAGCAAGCACTCAGCGATTGGGAACGGCACACAGGTTCTAAATTAAGAAACTGGAGAACAAGTATTAGGGTCAAAGACTCCATGTTACCACTTGAACAGTGGATGCTGCAATTAGCAGAGGTCCATGCTAATGCTCAAGTTTCTGTCAAACCTAAAAAGCCTTCTCTGAAAGAGAGGAAGCAGAAGTTGCTTGCCTTCTTGCAAGAGAAGTATGAACCTGTTCATGCCAAATGGACAACAGAACGATGTGCTGTTTGTAGATGGGTCGAGGACTGGGACTACAACAAAATTATCATTTGCATCCGATGTCAAATAGCTGTTCATCAAGAATGCTACGGAGCAAGAAATGTTCAAGACTTCACATCTTGGGTCTGTAAAGCTTGTGAGACACCTAACATCAAGCGCGAGTGTTGTCTTTGTCCTGTCAAAGGTGTGTCTTCCCCAAAAATCGAAACACATGATATGTATAAATTCATCACATTTTTATTTGTTTGA 1278 0.4186 MFLGYAGSESQRDYAWVKHGMIFPFMDYVDRFQGQSELTSYDSSDFQMAIEEAFLADQGFTEKLIADINAAAGNAGFDDTILRALHRVTGSNQYAGYHFLNQDLLDTRPCEACGLRLPFKMSKKLKGLAPNGKFLCKTCARLTKSNHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISRNHFKNLQGTDYYCPTCKAKFDFELSDLEKSHPRVKSNRKNGQLGGLPNKVAVLCNGVEGIYFSSLHLVVCKCGFCGNEKQALSDWERHTGSKLRNWRTSIRVKDSMLPLEQWMLQLAEVHANAQVSVKPKKPSLKERKQKLLAFLQEKYEPVHAKWTTERCAVCRWVEDWDYNKIIICIRCQIAVHQECYGARNVQDFTSWVCKACETPNIKRECCLCPVKGVSSPKIETHDMYKFITFLFV 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121080g00003 425 ProSitePatterns Zinc finger PHD-type signature. 344 389 IPR019786 -
Stsc121080g00003 425 SUPERFAMILY FYVE/PHD zinc finger 341 404 IPR011011 -
Stsc121080g00003 425 PANTHER PHD FINGER PROTEINS 26 217 - -
Stsc121080g00003 425 Pfam PHD-finger 356 390 - -
Stsc121080g00003 425 SMART PHD_3 343 390 IPR001965 -
Stsc121080g00003 425 SMART PHD_3 148 200 IPR001965 -
Stsc121080g00003 425 ProSiteProfiles Zinc finger PHD-type profile. 341 392 IPR019787 -
Stsc121080g00003 425 FunFam Histone-lysine N-methyltransferase 331 392 - -
Stsc121080g00003 425 SUPERFAMILY FYVE/PHD zinc finger 145 203 IPR011011 -
Stsc121080g00003 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 330 397 IPR013083 -
Stsc121080g00003 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 203 IPR013083 -
Stsc121080g00003 425 Pfam PHD-finger 148 201 IPR019787 -
Stsc121080g00003 425 CDD PHD_ATX3_4_5_like 343 389 IPR042011 -
Stsc121080g00003 425 ProSiteProfiles Zinc finger PHD-type profile. 146 202 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121080g00003 Stsc-Chr121080 3280 6895 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121080g00003 106 173 EF-hand Containing Proteins AT5G28340 50.000 3.01e-15 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc121080g00003 PHD 3.9e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121080g00003 - - aprc:113853254 744.962