Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121080g00002 ATGACCAAATTTTCTTGTAGGGCTCCCAATCCTGACACTGTTTTGATCATGCAAACCCCTCTTGGGGTCATTTCAACCAAAAACCTTCTCCAGACTAAGAGAAAAACTGGATCAAGGTTAATTGCTTCAAACAGAGTAAAGCTAGAAGACCCTCCTGTTGATAACGTCGAGAACGAGCCATTATCTGCTGCTAGGTGTCGTATCTTTCAAAGGACAAATCCTACCAAAAAGAGAGCAGCGGAGGAAACCGTTCCACTTTACGTTGGCGGACATCGCCATCATACTTTAGATGCAATACAGAAACTAAATACATACAGAGCAGTAGAGGAACCTCTGACGTTTTCTTCCTTTAGAGAACGCCTTCGCCACTTACAGAAAACCGAAAACGAACGAGTTTGCTTTGGTAGATCAGGCATTCATGGATGGGGCCTCTTTGCGCGCAGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGTGAACAAGTGCGAGGCAGCATTGCAGATTTGAGGGAGGCACGCTACCGGTCGGAAGGGAAAGATTGTTATCTGTTTAAGATAAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGGAATATAGCAAGGCTAATCAATCATTCTTGCATGCCAAATTGCTATGCAAGGATCATGAGCGTTGGCGATGATGAGAACCGGATTGTACTAATCGCCAAGACAAACGTATCTGCTGGTGACGAGTTAACATATGACTACTTATTTGATCCTGATGAGCCTGATGAATTCAAGGTCCCATGTCTATGTAAAGCTCCAAATTGTCGGAAATTCATGAATTAG 819 0.4322 MTKFSCRAPNPDTVLIMQTPLGVISTKNLLQTKRKTGSRLIASNRVKLEDPPVDNVENEPLSAARCRIFQRTNPTKKRAAEETVPLYVGGHRHHTLDAIQKLNTYRAVEEPLTFSSFRERLRHLQKTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRGSIADLREARYRSEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDENRIVLIAKTNVSAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121080g00002 272 FunFam Histone-lysine N-methyltransferase 104 272 - -
Stsc121080g00002 272 Pfam SET domain 141 246 IPR001214 GO:0005515
Stsc121080g00002 272 SMART set_7 130 253 IPR001214 GO:0005515
Stsc121080g00002 272 ProSiteProfiles Post-SET domain profile. 256 272 IPR003616 -
Stsc121080g00002 272 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 131 272 IPR044570 GO:0042800|GO:0051568
Stsc121080g00002 272 SMART PostSET_3 256 272 IPR003616 -
Stsc121080g00002 272 CDD SET_SETD1-like 117 268 - -
Stsc121080g00002 272 Gene3D SET domain 100 272 IPR046341 -
Stsc121080g00002 272 SUPERFAMILY SET domain 122 269 IPR046341 -
Stsc121080g00002 272 ProSiteProfiles SET domain profile. 130 247 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121080g00002 Stsc-Chr121080 508 3083 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121080g00002 136 272 C2H2 Transcription Factor Family AT2G23740 35.065 2.93e-16 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc121080g00002 SET 2.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121080g00002 - - aprc:113853254 466.463