Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121080g00001 ATGTTCCTTGGTTATGCCGGGAGCGAAAGCCAAAGGGACTATGCATGGGTGAAGCATGGAATGATTTTTCCATTTATGGATTATGTAGACAGGTTTCAGGGGCAGTCTGAACTTACTTCCTACGATTCCTCTGATTTCCAAATGGCAATAGAGGAGGCATTTTTGGCAGACCAGGGCTTCACGGAGAAGTTGATAGCTGATATAAATGCAGCAGCAGGTAATGCTGGATTTGATGATACTATTCTCAGGGCCCTTCATAGGGTCACTGGTTCAAACCAGTATGCAGGATATCACTTTCTGAATCAGGATTTATTAGACACCAGACCCTGTGAAGCCTGTGGGTTGCGCCTTCCGTTCAAAATGTCAAAGAAATTGAAGGGTTTGGCTCCCAATGGAAAATTCCTGTGTAAAACATGTGCTAGGTTAACAAAATCAAATCATTATTGTGGGATATGCAAGAAAGTTTGGAATCATTCAGATAGTGGAAGTTGGGTGCGCTGTGATGGATGTAAAGTGTGGGTGCATGCGGAATGTGACAAAATTTCTCGAAACCATTTCAAGAATCTTCAGGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATCTAGAAAAATCACATCCAAGAGTCAAGTCGAACAGAAAAAACGGACAGCTAGGAGGGCTTCCAAATAAGGTCGCTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTTCAAGCCTTCACTTAGTTGTTTGCAAGTGTGGTTTTTGTGGAAATGAAAAGCAAGCACTCAGCGATTGGGAACGGCACACAGGTTCTAAATTAAGAAACTGGAGAACAAGTATTAGGGTCAAAGACTCCATGTTACCACTTGAACAGTGGATGCTGCAATTAGCAGAGGTCCATGCTAATGCTCAAGTTTCTGTCAAACCTAAAAAGCCTTCTCTGAAAGAGAGGAAGCAGAAGTTGCTTGCCTTCTTGCAAGAGAAGTATGAACCTGTTCATGCCAAATGGACAACAGAACGATGTGCTGTTTGTAGATGGGTCGAGGACTGGGACTACAACAAAATTATCATTTGCATCCGATGTCAAATAGCTGTTCATCAAGAATGCTACGGAGCAAGAAATGTTCAAGACTTCACATCTTGGGTCTGTAAAGCTTGTGAGACACCTAACATCAAGCGCGAGTGTTGTCTTTGTCCTGTCAAAGGCGGTGCTCTGAAACCAACCGATATTGACTCGTTATGGGTTCATGTCACCTGTGCTTGGTTTCGACCGGAAGTCTCTTTTCCCAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTGAGTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATTCATGGTTCATGTACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCATCAAGGGCTGGTTACCGAATGGAGTTGCATATTTCTGAGAAAAATGGTAAGCAGACTACAAGAATGGTCTCTTATTGTGCTTACCACAGGGCTCCCAATCCTGACACTGTTTTGATCATGCAAACCCCTCTTGGGGTCATTTCAACCAAAAACCTTCTCCAGACTAAGAGAAAAACTGGATCAAGGTTAATTGCTTCAAACAGAGTAAAGCTAGAAGACCCTCCTGTTGATAACGTCGAGAACGAGCCATTATCTGCTGCTAGGTGTCGTATCTTTCAAAGGACAAATCCTACCAAAAAGAGAGCAGCGGAGGAAACCGTTCCACTTTACGTTGGCGGACATCGCCATCATACTTTAGATGCAATACAGAAACTAAATACATACAGAGCAGTAGAGGAACCTCTGACGTTTTCTTCCTTTAGAGAACGCCTTCGCCACTTACAGAAAACCGAAAACGAACGAGTTTGCTTTGGTAGATCAGGCATTCATGGATGGGGCCTCTTTGCGCGCAGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGTGAACAAGTGCGAGGCAGCATTGCAGATTTGAGGGAGGCACGCTACCGGTCGGAAGGGAAAGATTGTTATCTGTTTAAGATAAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGGAATATAGCAAGGCTAATCAATCATTCTTGCATGCCAAATTGCTATGCAAGGATCATGAGCGTTGGCGATGATGAGAACCGGATTGTACTAATCGCCAAGACAAACGTATCTGCTGGTGACGAGTTAACATATGACTACTTATTTGATCCTGATGAGCCTGATGAATTCAAGGTCCCATGTCTATGTAAAGCTCCAAATTGTCGGAAATTCATGAATTAG 2328 0.4287 MFLGYAGSESQRDYAWVKHGMIFPFMDYVDRFQGQSELTSYDSSDFQMAIEEAFLADQGFTEKLIADINAAAGNAGFDDTILRALHRVTGSNQYAGYHFLNQDLLDTRPCEACGLRLPFKMSKKLKGLAPNGKFLCKTCARLTKSNHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISRNHFKNLQGTDYYCPTCKAKFDFELSDLEKSHPRVKSNRKNGQLGGLPNKVAVLCNGVEGIYFSSLHLVVCKCGFCGNEKQALSDWERHTGSKLRNWRTSIRVKDSMLPLEQWMLQLAEVHANAQVSVKPKKPSLKERKQKLLAFLQEKYEPVHAKWTTERCAVCRWVEDWDYNKIIICIRCQIAVHQECYGARNVQDFTSWVCKACETPNIKRECCLCPVKGGALKPTDIDSLWVHVTCAWFRPEVSFPSDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHISEKNGKQTTRMVSYCAYHRAPNPDTVLIMQTPLGVISTKNLLQTKRKTGSRLIASNRVKLEDPPVDNVENEPLSAARCRIFQRTNPTKKRAAEETVPLYVGGHRHHTLDAIQKLNTYRAVEEPLTFSSFRERLRHLQKTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRGSIADLREARYRSEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDENRIVLIAKTNVSAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121080g00001 775 FunFam Histone-lysine N-methyltransferase 331 392 - -
Stsc121080g00001 775 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 203 IPR013083 -
Stsc121080g00001 775 CDD SET_SETD1-like 620 771 - -
Stsc121080g00001 775 ProSiteProfiles Extended PHD (ePHD) domain profile. 395 510 IPR034732 -
Stsc121080g00001 775 ProSiteProfiles Zinc finger PHD-type profile. 341 392 IPR019787 -
Stsc121080g00001 775 SUPERFAMILY SET domain 625 772 IPR046341 -
Stsc121080g00001 775 SMART PostSET_3 759 775 IPR003616 -
Stsc121080g00001 775 FunFam Histone-lysine N-methyltransferase 393 512 - -
Stsc121080g00001 775 CDD PHD_ATX3_4_5_like 343 389 IPR042011 -
Stsc121080g00001 775 ProSiteProfiles Zinc finger PHD-type profile. 146 202 IPR019787 -
Stsc121080g00001 775 ProSitePatterns Zinc finger PHD-type signature. 344 389 IPR019786 -
Stsc121080g00001 775 Pfam PHD-finger 148 201 IPR019787 -
Stsc121080g00001 775 CDD ePHD_ATX3_4_5_like 398 509 IPR041955 -
Stsc121080g00001 775 ProSiteProfiles Post-SET domain profile. 759 775 IPR003616 -
Stsc121080g00001 775 SMART set_7 633 756 IPR001214 GO:0005515
Stsc121080g00001 775 Pfam SET domain 644 749 IPR001214 GO:0005515
Stsc121080g00001 775 SUPERFAMILY FYVE/PHD zinc finger 145 204 IPR011011 -
Stsc121080g00001 775 PANTHER PHD FINGER PROTEINS 280 755 - -
Stsc121080g00001 775 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 512 IPR013083 -
Stsc121080g00001 775 Pfam PHD-zinc-finger like domain 397 509 - -
Stsc121080g00001 775 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 775 IPR025780 -
Stsc121080g00001 775 Pfam PHD-finger 356 390 - -
Stsc121080g00001 775 FunFam Histone-lysine N-methyltransferase 607 775 - -
Stsc121080g00001 775 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 330 392 IPR013083 -
Stsc121080g00001 775 Gene3D SET domain 615 775 IPR046341 -
Stsc121080g00001 775 ProSiteProfiles SET domain profile. 633 750 IPR001214 GO:0005515
Stsc121080g00001 775 SMART PHD_3 454 510 IPR001965 -
Stsc121080g00001 775 SMART PHD_3 343 390 IPR001965 -
Stsc121080g00001 775 SMART PHD_3 148 200 IPR001965 -
Stsc121080g00001 775 SUPERFAMILY FYVE/PHD zinc finger 341 406 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121080g00001 Stsc-Chr121080 508 6895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121080g00001 344 509 C2H2 Transcription Factor Family AT3G14740 33.908 2.69e-20 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc121080g00001 zf-HC5HC2H_2 9.7e-28 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121080g00001 - - aprc:113853254 1417.91