Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121078g00010 ATGGGCAGAAATAGGATGAAGAATCTGCTTAGGAAGCTGCACATCGGCGGTGATAAGGGTGACGGCGACGGCGACGGCGACGGCGACGGCGAGGGTGGCGTTTCTCCTACTATTAACCAGCTCCCGAATCGCAATCTGAGTGTTTCCGAGCAGGAGCATGAACATGATTTTCAGTTTCAGATGAGGATGGCGTTGGCAATCAGTGCTTCCCATCCGATTCCGAACAATTACTCTGACTCCGATCAGATCGATGCCGCCAAGCAGATGAGCTTAGGTTCTGAATCTTCCCTCACACAATTCCAATCCCTTCGCTATTGGAATTATAGTGTGATTGGTTATGAGGAGAAAGTGATGGATGAGTTTTATGATATTTGTGGGATCTCTTCGAATTTGATTCGTCGTGGAAAGATGCCCTTATTGGTGGATCTGCAGGCTAAAACTACCTCACAAAATGAAAATGGTGATCGTGAAGTCATCTTGGTGAACCGCTTAGTTGATCTTGAGCTGCAGCATCTTGAGGAGAAGGCCTGTGCCTTGTTCAATGACTGTCCTGTGTCCGAAAAAGGATTGATTTTAAGTGGCTTACTACCGAGACTTGCTGATATTGTTGTTACTAGAATGGGTGGCACAGTTGGTAGTGCAGATAACATGACAGAAAGGTGGGCTAGGAGGAGTAATGAGTTGAGAGATTCTTCAAGAACCATTGTTCTTCCTCTTGGCTCTCTTGATGTTGGACTTTCACGTCACCGAGCCTTGCTTTTTAAGGTACTTGCTGACAAGATTAATATTCCTTGCATGCTTGTGAAAGGGAGCTATTACACTGGAAGTGATGATGGAGCATTGAATTTGATAAAAGCTGACGATGGAAGTGAATACATCATTGATATGATGGGTGCGCCTGGGGTTCTTATTCCTGCTGAGGTGCCAAGCAGTCAGCTCCAAAACTATAGCTTTTCTGTAAGGAGTTGTGAAGAAATTGTCGGAGCAGGACTGTCTAACAGAACACATTTGATGCTTGATGATAGAACTCGAGCGTTGGGTAGCTCACCTGATCTATTCAGCAACATACCGAAAGCAGTCAGGTCCCAGTCAGAAGAACCCTTAATTGTGGGTGGTCAAATGAAACCAGTTGATAATATCCTTGTTGGAATGAGTGAAACAGAGAGGTTTGGACATAATTTGGGAAATCTTCTAAGGTCACTGCATAAGTCATGTAAGTTCTCATCACATACAGAAACATCACCAGCGGAAAAGATTCGTATAAACAACGTATCCAAGTATGTCCTCAGTGCAGCAAAGAACCCAGAATTTGCACAAAAACTACACACAGTTTTGCTAGAGAGTGGAGCCCTCCCCCCAGACGATCTCTTTTCAGGTGTTTATCCAGAAAATATGGGAGAAGATAAACCATGTGAAGAATTTACCAGGGATATTGTTCTAGATGATCCAAATAGGTTATCATTAAGCTACAACAAATCTCTCATACCCTGTCAAATGAAGCACTCTGCCCATAATACTAGGTCAGAACAGCAGAAAGAATTTTACATAGATAGATATGATAATTCCACACCGTGTGATTGTAAATGTGATACTACGGGAAAGGGGTATGCGATAGTTTGTGACAATAGAGTTGATGAGTTAGGGCAATCTGATAACTTATGTAAAGAACAATGTCTCCAATCTGACTTGCCCAAGAGAGTTGTTTCTTGTGAAACACGTGATAGGTTTGACTTTCCCCATGATGAGGATGACAAAAATGGTTATAATGAGGTTGGTGTAGCTTCAAATGATGTTGGATTTTGTAAAGAATCAGCCATTCAAATAAATAAGGCACCCTGTGTAGACTCTGTAAGGTGTATCCCATATGATGATAAATGCGACAGAGTTAACCCAGTCTTGAGTGAGAGAAAAGAATGGGAAATTCAATGGGAGGATCTTCGTATTGGTAGACGTATTGGTATAGGTTCTTATGGTGAGGTTTTCCATGCTGTTTTCAATGGTTCGGAAGTTGCTGTGAAGAAGTTTCTAACACAAGATTTTTCTAGTGATGCAGTGGCTCAGTTCAAATCTGAAGTTGAGATCATGTTAAGGCTGCGGCATCCCAATATTGTGCTCTTCATGGGAGCTATTACTCGTCCGCCACATCTATCCATCTTGACAGAGTTTCTCCCAAGAGGAAATTTATATGGTCTATTGCGTAATCCTAAGTTTCAATTTAATGACAAGAGGCGGTTGCGTATGGCTGTTGACGTGGCTAAGGGAATGAACTACTTGCACACAAGTCATCCTCCCATAGTCCATCGCGATTTGAAGTCTCCAAATCTTCTTGTCTCCAAGCATTGGGTTCTTAAGGTCTGTGATTTTGGTCTATCGCGGATGAAGCACCATACTTTTTTGTCATCAAACTCTTATGCTGGAACGGCCGAGTGGATGGCACCAGAAGTCTTAAGAAACGAGCTTGCCAATGAAAAATGTGATGTATATAGCTTTGGAGTAATCTTATGGGAGTTGGCTAGCACAATGATCCCGTGGCAAGGTTTGAACCAAATGCAGGTTGTTGGAGCTGTTGGATTCCAAAACAGGCGCCTTGAAATTCCAGATGATGTTGATCCAGAAGTAGCACAGATAATACGTGATTGTTGGCAAATGGATCCACAGTTACGGCCATCATTCTCCGAGTTGTTGCCTCGTCTCTGCCAACTTCAGCATCTTCTTGTCGTTAAAAGTGTAAAACGAGCTCCACACATCAAATGA 2754 0.4281 MGRNRMKNLLRKLHIGGDKGDGDGDGDGDGEGGVSPTINQLPNRNLSVSEQEHEHDFQFQMRMALAISASHPIPNNYSDSDQIDAAKQMSLGSESSLTQFQSLRYWNYSVIGYEEKVMDEFYDICGISSNLIRRGKMPLLVDLQAKTTSQNENGDREVILVNRLVDLELQHLEEKACALFNDCPVSEKGLILSGLLPRLADIVVTRMGGTVGSADNMTERWARRSNELRDSSRTIVLPLGSLDVGLSRHRALLFKVLADKINIPCMLVKGSYYTGSDDGALNLIKADDGSEYIIDMMGAPGVLIPAEVPSSQLQNYSFSVRSCEEIVGAGLSNRTHLMLDDRTRALGSSPDLFSNIPKAVRSQSEEPLIVGGQMKPVDNILVGMSETERFGHNLGNLLRSLHKSCKFSSHTETSPAEKIRINNVSKYVLSAAKNPEFAQKLHTVLLESGALPPDDLFSGVYPENMGEDKPCEEFTRDIVLDDPNRLSLSYNKSLIPCQMKHSAHNTRSEQQKEFYIDRYDNSTPCDCKCDTTGKGYAIVCDNRVDELGQSDNLCKEQCLQSDLPKRVVSCETRDRFDFPHDEDDKNGYNEVGVASNDVGFCKESAIQINKAPCVDSVRCIPYDDKCDRVNPVLSERKEWEIQWEDLRIGRRIGIGSYGEVFHAVFNGSEVAVKKFLTQDFSSDAVAQFKSEVEIMLRLRHPNIVLFMGAITRPPHLSILTEFLPRGNLYGLLRNPKFQFNDKRRLRMAVDVAKGMNYLHTSHPPIVHRDLKSPNLLVSKHWVLKVCDFGLSRMKHHTFLSSNSYAGTAEWMAPEVLRNELANEKCDVYSFGVILWELASTMIPWQGLNQMQVVGAVGFQNRRLEIPDDVDPEVAQIIRDCWQMDPQLRPSFSELLPRLCQLQHLLVVKSVKRAPHIK 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121078g00010 917 ProSitePatterns Protein kinases ATP-binding region signature. 652 674 IPR017441 GO:0005524
Stsc121078g00010 917 ProSitePatterns Serine/Threonine protein kinases active-site signature. 765 777 IPR008271 GO:0004672|GO:0006468
Stsc121078g00010 917 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 198 899 - -
Stsc121078g00010 917 Pfam Ethylene-responsive protein kinase Le-CTR1 99 304 - -
Stsc121078g00010 917 FunFam Serine/threonine-protein kinase isoform 1 636 724 - -
Stsc121078g00010 917 ProSiteProfiles Protein kinase domain profile. 646 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121078g00010 917 Gene3D Transferase(Phosphotransferase) domain 1 725 908 - -
Stsc121078g00010 917 PRINTS Tyrosine kinase catalytic domain signature 759 777 IPR001245 GO:0004672|GO:0006468
Stsc121078g00010 917 PRINTS Tyrosine kinase catalytic domain signature 806 816 IPR001245 GO:0004672|GO:0006468
Stsc121078g00010 917 PRINTS Tyrosine kinase catalytic domain signature 869 891 IPR001245 GO:0004672|GO:0006468
Stsc121078g00010 917 PRINTS Tyrosine kinase catalytic domain signature 825 847 IPR001245 GO:0004672|GO:0006468
Stsc121078g00010 917 PRINTS Tyrosine kinase catalytic domain signature 720 733 IPR001245 GO:0004672|GO:0006468
Stsc121078g00010 917 MobiDBLite consensus disorder prediction 14 42 - -
Stsc121078g00010 917 SMART serkin_6 646 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121078g00010 917 Gene3D Phosphorylase Kinase; domain 1 639 723 - -
Stsc121078g00010 917 SUPERFAMILY Protein kinase-like (PK-like) 629 896 IPR011009 -
Stsc121078g00010 917 Pfam Protein tyrosine and serine/threonine kinase 646 897 IPR001245 GO:0004672|GO:0006468
Stsc121078g00010 917 FunFam PAS domain-containing protein tyrosine kinase family protein 724 913 - -
Stsc121078g00010 917 CDD STKc_MAP3K-like 652 898 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121078g00010 Stsc-Chr121078 30199 35456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121078g00010 58 904 MAP Kinase Kinase Kinase AT5G11850 51.609 0.0 817
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Stsc121078g00010 PK_Tyr_Ser-Thr 9.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121078g00010 K04424 - gmx:100779790 997.653