Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121078g00009 ATGGCAAGGAAATGCACGTATTGTGGGAATTCTGGTCACAATTCAAGGACTTGCAACCACAGTTTCAGTAGTACTAGTAGTACCACAGGGGGAAGTAGTGGACTAAAGCTCTTTGGGGTTCAGCTTCAACTTGATGATAATCAATATTCTCCTTCTTCTTCTTCTTCATGTTTTGACATGATGATGATGAGAACAAGTTTTAGCATGGACTACCTTCTATCCTTATCTTCTTCTTCTTCCTCTTTATCAATATCGTCACTTGTTGGTGCAAATGATAACACACAAGAAATATCTCATTCTTACTTAACAACCGGTACCAGCAGCAGTGGGCTTATGTCAACTATCAAAGACAATAACAAAGGTTTGGCATGGAGTGAGGAGGAACACCGTGTATTCGTAGAGGGGCTAGAGAAGCTGGGGAAGGGTAACTGGAGAGACATATCCAGATGCTTTGTGAGAACAAGAACGCCCACTCAGGTGGCCAGCCATGCACAGAAGTATTTTCTCCGTCACACACGGCGGAGAAAGCACCCCTTCACCCTATCAAATGGTGGCCATGATTCCATTGTTCTATCTCATCAGTTGCTTGCCTCTGCAACTTCATCATCAACAAATTGCACCCCTGATTTGGAATTGAAACTTGCAACTCCATCTCCTTAA 660 0.4318 MARKCTYCGNSGHNSRTCNHSFSSTSSTTGGSSGLKLFGVQLQLDDNQYSPSSSSSCFDMMMMRTSFSMDYLLSLSSSSSSLSISSLVGANDNTQEISHSYLTTGTSSSGLMSTIKDNNKGLAWSEEEHRVFVEGLEKLGKGNWRDISRCFVRTRTPTQVASHAQKYFLRHTRRRKHPFTLSNGGHDSIVLSHQLLASATSSSTNCTPDLELKLATPSP 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121078g00009 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 172 IPR017930 -
Stsc121078g00009 219 FunFam transcription factor MYB1R1 122 173 - -
Stsc121078g00009 219 SUPERFAMILY Homeodomain-like 119 172 IPR009057 -
Stsc121078g00009 219 CDD SANT 123 168 IPR001005 -
Stsc121078g00009 219 ProSiteProfiles SANT domain profile. 124 172 IPR017884 -
Stsc121078g00009 219 SMART sant 120 170 IPR001005 -
Stsc121078g00009 219 PANTHER TRANSCRIPTION FACTOR KUA1 3 181 - -
Stsc121078g00009 219 ProSiteProfiles Myb-like domain profile. 116 168 IPR001005 -
Stsc121078g00009 219 Gene3D - 124 173 - -
Stsc121078g00009 219 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Stsc121078g00009 219 Pfam Myb-like DNA-binding domain 123 168 IPR001005 -
Stsc121078g00009 219 NCBIfam myb-like DNA-binding domain, SHAQKYF class 119 170 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121078g00009 Stsc-Chr121078 28042 29079 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc121078g00009 Myb_DNA-binding 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121078g00009 - - aprc:113866246 169.474