Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121078g00004 ATGGGTATCTGCATATCCACTGAATCTTCAGAGATTCATCATGAATCATCTAAATTAGCTACTGATGAGAATTTAACAGTGTTTGAGCCTAGCAAGAATAGTAAATTAAGTAAGATTCACAGACTTTCTTCTATTTACTCTAAAAAGGGTAGCAAAGGACTCAACCAAGATGCTGCCACTCTTTACCAGGGTTATGAAATGGAGGATGCAGCATTTTGTGGTGTTTTTGATGGACACGGAAGGAATGGTCGCATAGTGAGCCAAATAGTAAACAAGCGTTTGTCTTCACTCATTCTGAACCAAAAGAATATGATAGCTCATGCCAAGAGTGATGATAACAACATCATATTAGAAGATGATGACTCGTGTACAAACAAGAATTTTCAAGAATGGAAAGGAGCTATTCTTAGTGCTTTCAGGGTGATGGACAAGGAGGTGAATCAACTAGAGAATCTAGATTTCTCTTGCAGTGGAACTACAGCTATAGTTGCTATAAGACAGAATGAAGATCTTATCATGGCTAACCTTGGTGACTCAAGAGCTGTGTTGGGGACAATATGTGACGGTGAAATCATTCCCATTCAACTGTCCACAGATATGAAGCCTGGTTTACCTGATGAAGCAGATAGAATAAGAAGTTGTAATGGTCGTGTATTTGCTCTACATGAGGAACCACACATCCAAAGAGTGTGGTTACCCAATGAGAACGCCCCAGGCCTGGCTATGTCTCGTGCTTTTGGAGATTTCATCCTTAAGGACCATGGTATTATTGCTATTCCGGAGATTTCATATCGCCCTCTAACATCAAGTGACCAATTTCTTGTGCTTGCAAGTGATGGGGTATGTGCGGTGTGA 855 0.4047 MGICISTESSEIHHESSKLATDENLTVFEPSKNSKLSKIHRLSSIYSKKGSKGLNQDAATLYQGYEMEDAAFCGVFDGHGRNGRIVSQIVNKRLSSLILNQKNMIAHAKSDDNNIILEDDDSCTNKNFQEWKGAILSAFRVMDKEVNQLENLDFSCSGTTAIVAIRQNEDLIMANLGDSRAVLGTICDGEIIPIQLSTDMKPGLPDEADRIRSCNGRVFALHEEPHIQRVWLPNENAPGLAMSRAFGDFILKDHGIIAIPEISYRPLTSSDQFLVLASDGVCAV 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121078g00004 284 ProSiteProfiles PPM-type phosphatase domain profile. 42 284 IPR001932 -
Stsc121078g00004 284 CDD PP2Cc 41 281 IPR001932 -
Stsc121078g00004 284 SUPERFAMILY PP2C-like 38 282 IPR036457 -
Stsc121078g00004 284 PANTHER PROTEIN PHOSPHATASE 34 283 IPR015655 GO:0004722|GO:0006470
Stsc121078g00004 284 SMART PP2C_4 30 284 IPR001932 -
Stsc121078g00004 284 Gene3D - 25 284 IPR036457 -
Stsc121078g00004 284 Pfam Protein phosphatase 2C 68 281 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121078g00004 Stsc-Chr121078 10084 12360 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121078g00004 1 281 PP2C-type Phosphatase Gene Family AT5G26010 51.228 5.02e-91 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121078g00004 - - gmx:100795893 368.622