Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121077g00006 ATGAAGATTAATGTCAAGACTCTCAAAGGAACTCACTTCCAAATCGAGGTGGAACCCCAGAACACGGTTGCTGATGTGAAGAGAAATATAGAGGGAGCACAAGGTGTTGATGTTTATCCAGCTTCACAACAAATGCTTATTCACCAGGGGAAAATGCTTAAAGATGACACAACCCTTGAAGACAATAAAAGTAAGGTATCATCAAGTGGTGCCTCATCTGCATCATCTACTTCTGCAAACCAGGCAACTCAACCTGCAAGTTCTTTGCCTCTCACTTCAGTGCCATCCTCAACATCGCAACCTCCTACTTCGACCGTTGGACATGATACAGCCGGCATCTATGGACAAGCAGCATCTAACCTGATTTCAGGAAGCAACTTAGAATCAACTGTTCAACAAATACTAGAAATGGGTGGGGGAAGTTGGGATCGAGATACTGTTATTCGGGCTCTTCGTGCAGCATTTAACAATCCTGAAAGAGCTATTGAGTATCTCTATTCAGGCATTCCTGAGCAAGCTGAAGTACCAGCAGTTGCCAGATCCCCCACTGCTGGGCTGGCAGCGAACCCTTCAGTACAGGCTCAGGCCCAGCAGCCTCAAGCCCAAGTTGCTCCTTCTGGTGGGCCTAACACCAACCCACTCAACCTCTTTCCCCAGGGCATTCCTGATATGGGTGCAAACGAAAATGCGGGTGACTTGGATTTCTTGCGAAACAGTCAACAGTTCCAAGCACTGAGAGCAATGGTGCAAGCGAATCCTCAGATTTTGCAGCCCATGCTTCAGGAGTTGGGAAGACAAAACCCAAATCTAATGCAGCTCATCCAAGAGCATCAAGCTGATTTCTTACGCCTGATAAATGAACCCGATGCAGAAGGGAATCTACCAAGTGAGTTGGCTTCCGCAATGCCGCAGACCATCACTGTCACCCCAGAGGAGAATGAGGCTATTCAAAGGCTTCAAGATATGGGATTTGATAGAGATCTTGTATTGGAGGTGTTCTTTGCATGCAACAAAAACGAGGAGCTGGCAGCCAACTATCTTTTGGATCACCAGAATGAATTTGAGGACTAG 1071 0.4678 MKINVKTLKGTHFQIEVEPQNTVADVKRNIEGAQGVDVYPASQQMLIHQGKMLKDDTTLEDNKSKVSSSGASSASSTSANQATQPASSLPLTSVPSSTSQPPTSTVGHDTAGIYGQAASNLISGSNLESTVQQILEMGGGSWDRDTVIRALRAAFNNPERAIEYLYSGIPEQAEVPAVARSPTAGLAANPSVQAQAQQPQAQVAPSGGPNTNPLNLFPQGIPDMGANENAGDLDFLRNSQQFQALRAMVQANPQILQPMLQELGRQNPNLMQLIQEHQADFLRLINEPDAEGNLPSELASAMPQTITVTPEENEAIQRLQDMGFDRDLVLEVFFACNKNEELAANYLLDHQNEFED 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121077g00006 356 Gene3D - 120 170 - -
Stsc121077g00006 356 NCBIfam UV excision repair protein Rad23 67 355 IPR004806 GO:0006289
Stsc121077g00006 356 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 345 - -
Stsc121077g00006 356 SMART ubq_7 1 82 IPR000626 GO:0005515
Stsc121077g00006 356 SMART CBM 231 274 IPR006636 -
Stsc121077g00006 356 Pfam UBA/TS-N domain 127 165 IPR015940 -
Stsc121077g00006 356 Pfam UBA/TS-N domain 311 347 IPR015940 -
Stsc121077g00006 356 FunFam UV excision repair protein RAD23 homolog 120 170 - -
Stsc121077g00006 356 Gene3D - 224 289 IPR036353 GO:0003684|GO:0006289|GO:0043161
Stsc121077g00006 356 Gene3D - 304 352 - -
Stsc121077g00006 356 CDD UBA1_Rad23_plant 121 170 - -
Stsc121077g00006 356 MobiDBLite consensus disorder prediction 188 214 - -
Stsc121077g00006 356 FunFam UV excision repair protein RAD23 1 69 - -
Stsc121077g00006 356 MobiDBLite consensus disorder prediction 54 111 - -
Stsc121077g00006 356 Gene3D - 1 69 - -
Stsc121077g00006 356 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 125 168 IPR015940 -
Stsc121077g00006 356 FunFam UV excision repair protein RAD23 homolog 303 351 - -
Stsc121077g00006 356 CDD Ubl_Rad23 1 63 - -
Stsc121077g00006 356 PRINTS DNA repair protein Rad23 signature 323 337 IPR004806 GO:0006289
Stsc121077g00006 356 PRINTS DNA repair protein Rad23 signature 259 281 IPR004806 GO:0006289
Stsc121077g00006 356 PRINTS DNA repair protein Rad23 signature 338 353 IPR004806 GO:0006289
Stsc121077g00006 356 PRINTS DNA repair protein Rad23 signature 306 322 IPR004806 GO:0006289
Stsc121077g00006 356 FunFam UV excision repair protein RAD23 B 224 289 - -
Stsc121077g00006 356 Pfam XPC-binding domain 233 288 IPR015360 GO:0003684|GO:0006289|GO:0043161
Stsc121077g00006 356 Coils Coil 260 280 - -
Stsc121077g00006 356 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 310 350 IPR015940 -
Stsc121077g00006 356 MobiDBLite consensus disorder prediction 63 111 - -
Stsc121077g00006 356 SUPERFAMILY Ubiquitin-like 1 63 IPR029071 -
Stsc121077g00006 356 Pfam Ubiquitin family 3 61 IPR000626 GO:0005515
Stsc121077g00006 356 SUPERFAMILY XPC-binding domain 230 292 IPR036353 GO:0003684|GO:0006289|GO:0043161
Stsc121077g00006 356 SUPERFAMILY UBA-like 295 353 IPR009060 GO:0005515
Stsc121077g00006 356 ProSiteProfiles Ubiquitin domain profile. 1 61 IPR000626 GO:0005515
Stsc121077g00006 356 SMART uba_6 127 167 IPR015940 -
Stsc121077g00006 356 SMART uba_6 312 349 IPR015940 -
Stsc121077g00006 356 SUPERFAMILY UBA-like 123 178 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121077g00006 Stsc-Chr121077 39874 43015 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121077g00006 1 61 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 44.262 6.53e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121077g00006 K10839 - zju:107416575 468.003