Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121077g00005 ATGAGTTTAGAAGTGAGGGAGTTCGGTGAATGTGTGGTGAGGTCCACAGAGCATAACTCCCGAGTTGGCATGGGTGATGGGCCCATAAATATAAGTGCAAAAGAGCTTTCCACACAACACAAGTTCCAAACTTGTTTTGCAAAACAAGCAAAGCACACAAAAACATCTCTCTCAGCCGCGTGCGGTGGTAACCGGTCCTCCGGGAAGCTCACCCAAATATACTCCAACATGAAGATTAATGTCAAGACCCTTAAAGGAACTCACTTTGAAATCCAAGTGCAACCGCAAGACACGGTTGCTGATGTGAAGAGAAACATAGAGGGAAATCAAGGTGCTCAAGTTTATCCAGCTGCACAGCAAATGCTTATTCATCAGGGTAAAGTGCTTAAGGATGACACAACCCTTGAAGACAATAAAGTTGCTGAAAATAGTTTTGTGGTGATCATGCTATCCAAGAGCAAGGTATCATCAGGTGAAGCCTCAACCACATCATCTGCATCTGCGAAACAGGCAACTCAACCTACAAGTTCTTTGCCTCCCACTTCATTGCCATCCTCAACATCTCAACCTCCTGCTCCTGCTTCAACTGTTGGACAGGGAGTATCCAATTCTGAGCAAAATCCTGTTACAACTCCTTCTAGTGATGTGGCCGGCATTTATGGCGAAGCAGCATCAAACCTCATTTCAGATAGCAATTTTGAATCGACTATTCAACAGATACTAGACATGGGGGGAGGTAGTTGGGATCGAGACATTGTTATCCGTGCTCTTAATGCAGCATATAACAATCCTGAAAGAGCTGTTGAGTATCTCTATTCAGGCATTCCTGGACGAGCTGAAGTACCAGCAATTCCAAGAGCCCCCACTATTGGGGAGGCAGCGAACCCTTTAGGTGAGGCTCAGGGTCAAGCCCAAGATGCACCTTCTGGTGGACCCAACACCAACCCGCTCAACCTCTTTCCCCAGGGTATTCCTGATATGGGTGTAAATGAAAATGCGGGCGACTTGGATTTTCTGCGAAACAGTCAACAGTTTCAAGCCCTGAGAGCGATGGTGCAAGCAAATCCCCAGATTTTGCAGCCCATGCTGCAGGAATTGGGTAGACAAAATCCACACCTAATGCAGCTCATCCAAGAGCATCAGGCTGATTTCTTACGCTTGATAAATGAACCTGATGGAGAAGAGAATCTACCGAGTGATTTGGCTGCTGCAATGCCGCAGACCATCACTGTCACCCCAGAAGAGAATGAGGCTATTCAAAGGCTTCAAGATATGGGATTTGATAGAGATCTTGTATTGGAGGTGTTCTTTGCATGTAACAAAAACGAGGAGCTGGCAGCCAATTATCTTTTGGATCACCATAATGAGTTTGAAGACTAA 1380 0.458 MSLEVREFGECVVRSTEHNSRVGMGDGPINISAKELSTQHKFQTCFAKQAKHTKTSLSAACGGNRSSGKLTQIYSNMKINVKTLKGTHFEIQVQPQDTVADVKRNIEGNQGAQVYPAAQQMLIHQGKVLKDDTTLEDNKVAENSFVVIMLSKSKVSSGEASTTSSASAKQATQPTSSLPPTSLPSSTSQPPAPASTVGQGVSNSEQNPVTTPSSDVAGIYGEAASNLISDSNFESTIQQILDMGGGSWDRDIVIRALNAAYNNPERAVEYLYSGIPGRAEVPAIPRAPTIGEAANPLGEAQGQAQDAPSGGPNTNPLNLFPQGIPDMGVNENAGDLDFLRNSQQFQALRAMVQANPQILQPMLQELGRQNPHLMQLIQEHQADFLRLINEPDGEENLPSDLAAAMPQTITVTPEENEAIQRLQDMGFDRDLVLEVFFACNKNEELAANYLLDHHNEFED 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121077g00005 459 FunFam UV excision repair protein RAD23 homolog 406 454 - -
Stsc121077g00005 459 PANTHER UV EXCISION REPAIR PROTEIN RAD23 77 448 - -
Stsc121077g00005 459 FunFam UV excision repair protein RAD23 77 156 - -
Stsc121077g00005 459 MobiDBLite consensus disorder prediction 158 216 - -
Stsc121077g00005 459 Pfam UBA/TS-N domain 234 271 IPR015940 -
Stsc121077g00005 459 Pfam UBA/TS-N domain 414 450 IPR015940 -
Stsc121077g00005 459 PRINTS DNA repair protein Rad23 signature 409 425 IPR004806 GO:0006289
Stsc121077g00005 459 PRINTS DNA repair protein Rad23 signature 362 384 IPR004806 GO:0006289
Stsc121077g00005 459 PRINTS DNA repair protein Rad23 signature 426 440 IPR004806 GO:0006289
Stsc121077g00005 459 PRINTS DNA repair protein Rad23 signature 441 456 IPR004806 GO:0006289
Stsc121077g00005 459 Gene3D - 73 153 - -
Stsc121077g00005 459 FunFam UV excision repair protein RAD23 homolog 226 276 - -
Stsc121077g00005 459 MobiDBLite consensus disorder prediction 292 313 - -
Stsc121077g00005 459 SMART ubq_7 77 151 IPR000626 GO:0005515
Stsc121077g00005 459 SUPERFAMILY Ubiquitin-like 77 159 IPR029071 -
Stsc121077g00005 459 SUPERFAMILY UBA-like 229 282 IPR009060 GO:0005515
Stsc121077g00005 459 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 228 274 IPR015940 -
Stsc121077g00005 459 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Stsc121077g00005 459 FunFam UV excision repair protein RAD23 B 327 392 - -
Stsc121077g00005 459 Pfam XPC-binding domain 336 391 IPR015360 GO:0003684|GO:0006289|GO:0043161
Stsc121077g00005 459 NCBIfam UV excision repair protein Rad23 77 458 IPR004806 GO:0006289
Stsc121077g00005 459 SUPERFAMILY XPC-binding domain 333 395 IPR036353 GO:0003684|GO:0006289|GO:0043161
Stsc121077g00005 459 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 413 453 IPR015940 -
Stsc121077g00005 459 Gene3D - 407 455 - -
Stsc121077g00005 459 MobiDBLite consensus disorder prediction 158 214 - -
Stsc121077g00005 459 Gene3D - 226 277 - -
Stsc121077g00005 459 SMART uba_6 233 273 IPR015940 -
Stsc121077g00005 459 SMART uba_6 415 452 IPR015940 -
Stsc121077g00005 459 SUPERFAMILY UBA-like 397 456 IPR009060 GO:0005515
Stsc121077g00005 459 SMART CBM 334 377 IPR006636 -
Stsc121077g00005 459 CDD Ubl_Rad23 77 150 - -
Stsc121077g00005 459 Gene3D - 328 392 IPR036353 GO:0003684|GO:0006289|GO:0043161
Stsc121077g00005 459 Pfam Ubiquitin family 79 152 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121077g00005 Stsc-Chr121077 35088 38544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121077g00005 77 150 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 3.55e-07 47.4