Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121075g00009 ATGGAACTGGAAAGTGTGTATCCTTCTTGGAATTGGAATTGGAATTTGTTAGTTGAAGAGAGGCAGAGCAGCAGCAGAGAATGGAGCAAAGAGGAGAACAAGAAGTTCGAGAGCGCGCTGGCGATTTTCGATAAGGAGACGCCGGATAGATGGCTGAAGGTGGCTGCTATGATCCCCGGAAGGAGTGTTTATGATGTGATCAAGCAGTACAAGGAGTTGGAAGACGATGTCAATGACATCGAAGCCGGCCGGGTACCTGTCCCCGGCTACATCGCCTCTTCTTTCACCTTCGAGCTTCTTCACAACCACAACCATGATGGATCTCGAAGAAGGTCTAACACCGGTGTTAGACCTTCTGATCAAGAAAGGAAGAAAGGTGTTCCTTGGACTCAAGAAGAGCATAGACGATTTCTGATGGGGCTTTTGAAGTATGGAAAAGGAGATTGGAGAAACATTTCGCGAAATTTCGTGGTGACGAAGACTCCTACACAAGTTGCTAGCCATGCTCAGAAGTACTACATAAGGCAAAAGGTATCTTCTGGAGGGAAAGATAAGAGGAGACCAAGCATCCATGATATAACAACTCTTAACCTTGCAGAAGCTGCTGCAACATTAGATGATAATAACAATAATACTAATAACAACAACAAGCCCCTTTCATTCAATGAGTCTAAAGTACAACTGGATTGGTTCAATCAGTGTAATAATGATGATGGAGCAGTGATGGTTTTCAACCCCAATTGCGATTTCGTGTCTTCTTCGGATGATATGGCTTCCAAGGCCTTCTTCTTCAAACAGCAAGGGCAGGATCTGTTTGATTGTGCTTTCCATGAAGCTTATGCAAAGCTGAAGATCCCGCATTTCGGATCCTCAGCTGCGGGATTCAACAAGGAAGCTGCTGCTGATTTTGGTATTCATGCATTGTAA 927 0.4455 MELESVYPSWNWNWNLLVEERQSSSREWSKEENKKFESALAIFDKETPDRWLKVAAMIPGRSVYDVIKQYKELEDDVNDIEAGRVPVPGYIASSFTFELLHNHNHDGSRRRSNTGVRPSDQERKKGVPWTQEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSSGGKDKRRPSIHDITTLNLAEAAATLDDNNNNTNNNNKPLSFNESKVQLDWFNQCNNDDGAVMVFNPNCDFVSSSDDMASKAFFFKQQGQDLFDCAFHEAYAKLKIPHFGSSAAGFNKEAAADFGIHAL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121075g00009 308 SUPERFAMILY Homeodomain-like 123 177 IPR009057 -
Stsc121075g00009 308 Gene3D - 127 178 - -
Stsc121075g00009 308 ProSiteProfiles Myb-like domain profile. 20 74 IPR001005 -
Stsc121075g00009 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 121 177 IPR017930 -
Stsc121075g00009 308 CDD SANT 128 172 IPR001005 -
Stsc121075g00009 308 SMART sant 24 76 IPR001005 -
Stsc121075g00009 308 SMART sant 125 175 IPR001005 -
Stsc121075g00009 308 MobiDBLite consensus disorder prediction 103 130 - -
Stsc121075g00009 308 Pfam Myb-like DNA-binding domain 128 172 IPR001005 -
Stsc121075g00009 308 Gene3D - 19 87 - -
Stsc121075g00009 308 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 22 237 IPR043363 -
Stsc121075g00009 308 FunFam transcription factor MYB1R1 127 178 - -
Stsc121075g00009 308 FunFam Transcription factor SRM1 20 87 - -
Stsc121075g00009 308 NCBIfam myb-like DNA-binding domain, SHAQKYF class 124 176 IPR006447 GO:0003677
Stsc121075g00009 308 ProSiteProfiles SANT domain profile. 129 177 IPR017884 -
Stsc121075g00009 308 SUPERFAMILY Homeodomain-like 26 80 IPR009057 -
Stsc121075g00009 308 ProSiteProfiles SANT domain profile. 23 78 IPR017884 -
Stsc121075g00009 308 CDD SANT 27 73 IPR001005 -
Stsc121075g00009 308 ProSiteProfiles Myb-like domain profile. 121 173 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121075g00009 Stsc-Chr121075 60080 61893 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc121075g00009 Myb_DNA-binding 2.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121075g00009 - - gmx:778039 382.104