Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121075g00008 ATGATTTTTCCAAGATTCTCCTCGATTCAAAAAGTTGAAGAGAGGCAGAGCAGCAGCAGAGAATGGAGCAAAGAGGAGAACAAGAAGTTCGAGAGCGCGCTGGCGATTTTCGATAAGGAGACGCCGGATAGATGGCTGAAGGTGGCTGCTATGATCCCCGGAAGGAGTGTTTATGATGTGATCAAGCAGTACAAGGAGTTGGAAGACGATGTCAATGACATCGAAGCCGGCCGGGTACCTGTCCCCGGCTACATCGCCTCTTCTTTCACCTTCGAGCTTCTTCACAACCACAACCATGATGGATCTCGAAGAAGGTCTAACACCGGTGTTAGACCTTCTGATCAAGAAAGGAAGAAAGGTGTTCCTTGGACTCAAGAAGAGCATAGACGATTTCTGATGGGGCTTTTGAAGTATGGAAAAGGAGATTGGAGAAACATTTCGCGAAATTTCGTGGTGACGAAGACTCCTACACAAGTTGCTAGCCATGCTCAGAAGTACTACATAAGGCAAAAGGTATCTTCTGGAGGGAAAGATAAGAGGAGACCAAGCATCCATGATATAACAACTCTTAACCTTGCAGAAGCTGCTGCAACATTAGATGATAATAACAATAATACTAATAACAACAACAAGCCCCTTTCATTCAATGAGTCTAAAGTACAACTGGATTGGTTCAATCAGTGTAATAATGATGATGGAGCAGTGATGGTTTTCAACCCCAATTGCGATTTCGTGTCTTCTTCGGATGATATGGCTTCCAAGGCCTTCTTCTTCAAACAGCAAGGGCAGGATCTGTTTGATTGTGCTTTCCATGAAGCTTATGCAAAGCTGAAGATCCCGCATTTCGGATCCTCAGCTGCGGGATTCAACAAGGAAGCTGCTGCTGATTTTGGTATTCATGCATTGTAA 909 0.4455 MIFPRFSSIQKVEERQSSSREWSKEENKKFESALAIFDKETPDRWLKVAAMIPGRSVYDVIKQYKELEDDVNDIEAGRVPVPGYIASSFTFELLHNHNHDGSRRRSNTGVRPSDQERKKGVPWTQEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSSGGKDKRRPSIHDITTLNLAEAAATLDDNNNNTNNNNKPLSFNESKVQLDWFNQCNNDDGAVMVFNPNCDFVSSSDDMASKAFFFKQQGQDLFDCAFHEAYAKLKIPHFGSSAAGFNKEAAADFGIHAL 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121075g00008 302 SUPERFAMILY Homeodomain-like 20 74 IPR009057 -
Stsc121075g00008 302 SUPERFAMILY Homeodomain-like 117 171 IPR009057 -
Stsc121075g00008 302 FunFam Transcription factor SRM1 14 81 - -
Stsc121075g00008 302 FunFam transcription factor MYB1R1 121 172 - -
Stsc121075g00008 302 Gene3D - 13 81 - -
Stsc121075g00008 302 SMART sant 119 169 IPR001005 -
Stsc121075g00008 302 SMART sant 18 70 IPR001005 -
Stsc121075g00008 302 CDD SANT 21 67 IPR001005 -
Stsc121075g00008 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 171 IPR017930 -
Stsc121075g00008 302 ProSiteProfiles Myb-like domain profile. 14 68 IPR001005 -
Stsc121075g00008 302 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Stsc121075g00008 302 CDD SANT 122 166 IPR001005 -
Stsc121075g00008 302 Gene3D - 121 172 - -
Stsc121075g00008 302 ProSiteProfiles SANT domain profile. 17 72 IPR017884 -
Stsc121075g00008 302 ProSiteProfiles SANT domain profile. 123 171 IPR017884 -
Stsc121075g00008 302 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 16 231 IPR043363 -
Stsc121075g00008 302 NCBIfam myb-like DNA-binding domain, SHAQKYF class 118 170 IPR006447 GO:0003677
Stsc121075g00008 302 Pfam Myb-like DNA-binding domain 122 166 IPR001005 -
Stsc121075g00008 302 MobiDBLite consensus disorder prediction 97 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121075g00008 Stsc-Chr121075 60080 61893 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc121075g00008 Myb_DNA-binding 2.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121075g00008 - - ccaj:109813886 373.629