Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121073g00013 ATGACATATATAAGCATACGGAACTCTTCTTTTACCTCCTTCACAAGCGCATTCTCGATCTGCCTCTTCACTCTTCACTCTTCACTCTTCACTCTTCACACTCACTCAAACCAGCAGCAGCCGCAGCTATTCATCTTCTTTAAGATGGCAGTTACATTGTATGACCTTAGCTCTGCATCTGGGTTGAAGAAGCTTGATGAGTACCTTCTCACCCGCAGTTACATCACTGGGTACCAAGCTTCAAAGGATGACCTTACAGTGTATGCAGCTTTATCAAAAGCTCCATCTGATGAATATGTGAATGTCTCTAGGTGGTACAAGCATATTCATGCTTTGTTGAGAATCTCGGGTGTTTCTGGCGAGGGATCTGGTGTCACTGTGAAGTCTTCTCTCGTGGCTGAAGCTGTTGCCACTCCTCCACCAGCTGACTCTAAGGCTGCTGCAGCTGATGATGAAGATGATGATGATGTGGATCTCTTTGGTGAAGAGACTGAGGAGGAGAAGAAGGCAGCTGAGGAACGTGCTGCTGCCATAAAGGCATCCGGAAAGAAGAAAGAGTCTGGAAAATCATCTGTTTTGATGGATATCAAGCCATGGGATGATGAGACTGACATGAAAAAGCTTGAAGAAGCAGTGAGAGGTGTTCAGA 649 0.4561 MTYISIRNSSFTSFTSAFSICLFTLHSSLFTLHTHSNQQQPQLFIFFKMAVTLYDLSSASGLKKLDEYLLTRSYITGYQASKDDLTVYAALSKAPSDEYVNVSRWYKHIHALLRISGVSGEGSGVTVKSSLVAEAVATPPPADSKAAAADDEDDDDVDLFGEETEEEKKAAEERAAAIKASGKKKESGKSSVLMDIKPWDDETDMKKLEEAVRGVQ 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121073g00013 216 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 56 216 - -
Stsc121073g00013 216 SUPERFAMILY GST C-terminal domain-like 29 116 IPR036282 -
Stsc121073g00013 216 Gene3D - 182 216 IPR014717 -
Stsc121073g00013 216 Gene3D - 33 129 - -
Stsc121073g00013 216 FunFam Elongation factor 1-delta 1 51 126 - -
Stsc121073g00013 216 Pfam EF-1 guanine nucleotide exchange domain 191 215 IPR014038 GO:0003746|GO:0006414
Stsc121073g00013 216 SUPERFAMILY eEF-1beta-like 186 215 IPR036219 -
Stsc121073g00013 216 Coils Coil 161 181 - -
Stsc121073g00013 216 MobiDBLite consensus disorder prediction 163 216 - -
Stsc121073g00013 216 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 153 161 IPR001326 GO:0003746|GO:0005853|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121073g00013 Stsc-Chr121073 65321 66688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121073g00013 55 216 Eukaryotic Initiation Factors Gene Family AT2G18110 79.878 5.56e-70 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121073g00013 K03232 - gmx:100777627 224.172