Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121073g00003 ATGGTGCCATCATCAGAAAATAATCCTGGTAGCAATGATAGAGATTGTGGAAAGCTTCCTGCCCCATCACCAACATCATCAAAGCTAATAAAAACGGATCCACAAAACAAGAAGCTGCTAAATTGTAAGTTTTGCAACAAGACATTCTCCAATAGCCAGGCATTGGGTGGCCATCAGAATGCACACAAGGAGGAGAGAGCAGCCGAGAAAAGAGAGAACATTCTCAACATGGCCTCTGCTTATAGGAACTATTCCACACCTTCTCAGTCTAATTGGCACAATTATTATGCTAATTTTTCTGATTTTACTCATAGTAGTAGTAGTAGAACACTAGGGCTACTACAACAACCACAAGCAACAATTCATAATAGATCTTCATCAGTTGCACTTGGACCTGGCTACCTTCACAATGTATTGTTGGGAAATCAAATCATGAATCCTCAACTAAGCATGCATCAGTTTCCGCCGCGACCGGCGTTTATGCCGCCGAAACAAGTATTGCCAGTAAATTTGCCACCACAACAGTCACAGTTGAGTTTACGTGAAAACATAAATCCAAGCCAAGCAAATAGACGAGGACAACAACAACCAGGTTTACCGGATAACAAATCTCAAGAAGAGATGGATTTGACGCTCAAGCTGTCCCTGTAA 651 0.4178 MVPSSENNPGSNDRDCGKLPAPSPTSSKLIKTDPQNKKLLNCKFCNKTFSNSQALGGHQNAHKEERAAEKRENILNMASAYRNYSTPSQSNWHNYYANFSDFTHSSSSRTLGLLQQPQATIHNRSSSVALGPGYLHNVLLGNQIMNPQLSMHQFPPRPAFMPPKQVLPVNLPPQQSQLSLRENINPSQANRRGQQQPGLPDNKSQEEMDLTLKLSL 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121073g00003 216 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 29 214 IPR044246 GO:0009788
Stsc121073g00003 216 MobiDBLite consensus disorder prediction 188 202 - -
Stsc121073g00003 216 MobiDBLite consensus disorder prediction 1 33 - -
Stsc121073g00003 216 SUPERFAMILY beta-beta-alpha zinc fingers 36 67 IPR036236 -
Stsc121073g00003 216 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Stsc121073g00003 216 MobiDBLite consensus disorder prediction 188 216 - -
Stsc121073g00003 216 Gene3D Classic Zinc Finger 25 92 - -
Stsc121073g00003 216 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121073g00003 Stsc-Chr121073 7130 7944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121073g00003 15 134 C2H2 Transcription Factor Family AT5G10970 34.167 1.32e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc121073g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121073g00003 - - ahf:112708745 235.728