Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121071g00007 ATGGCATCAGTTGCGGTGGACAGCTTGATCATGAAGCTGACGCGGTTACTGAATGAGGAAGTGACACTGCTGAAAGAAGTAAGGAAGAAAGTTGAAGGAGTGAAAAATGAGCTGTCTCTGATACAAGCTTACTTGAAGGATGCTGATGCCAAGGCAGACATTGGAGACACCTCCAGCCACGCCATCAAGGTTTGGGTCAAGCAACTCAGGCATGCTGCCTTTCACATCGAAGATGCCGTTGACTTTTACATGATCAAACTAGCCCCTCACCCTTCTCAAAGGCATGGTGTACTCAGCAAGTTTTATCTGGCGATAAGAAGTGTAGTACCCAGGCACCGGATCACATCTGAGATTGAGAATGTGACTTCGGCCATACGGAAGCTCTACGAAGATAAGCAAGCCCTTGGTCTCACTCTCACTCCATCATCATCAGAACAAAATGTGGTTGCACGAACACGATATGACCTTCGAATGGGTGCCCTTTTTATTAGGGAAGATGAACTCGTGGGAATTGATTATGCCATGAATTTGCTCACCAATTGGCTCTTACATGGAGAAGCCAAGCCCACTGTCATCTCCGTTGTCGGCGGAGGAGGACTCGGCAAAACAGCTATTGTTAGAAATCTTTACAACAAACTCAAGGAGGATTTTGATTGCTATGCCTGGATCACTGTTTCTCATTCCTCCAAAGAGGAACATTTGCTGACTACAATACAAACTTTGTACGAGAATGATGGTAAAAGTTATCCTGTGGAGGGAACAAGGGGAAAAGAGGTGGACATGCATACTTTGATAGAAAAACTAAGAGGCTACTTGCAAGGAAAGAGATATATGATCGTGTTTGATGATGTTTGGGAAATAAACTTCTGGGAATGCATGGAATTTGCTTTACCTGCTGATACAAATATCAGTAGCAGGATCATCATCACTACAAGGGATAGAGGAATAGCTGAATTTTGTCGACGTTCTGCTCCAGTTCGTATCCACGAGCTAAAACCATTACTTGATGAGGATGCTTTGAAGCTTTTTCTTTTGAAGACATTTCAATTTGACCTTCATGGTTGTCCTGAAGATCTCAATGAATTGTCTGAAAGATTTGTCAAGAGGTGCGAGGGAGTGCCGCTTGCCATTGTAGTTATTTCAGGCCTCCTTTCAACTAAGGAGAAAACTGTATCTGAATGGCAAAAGGTATATGATAGCCTCCGCTCGAAGTTCTCAAGCGATCCTCATCTGAGAAGCTTCTACCTAGTCTTGTTAGAAAGTTATCATGATCTTCCTTACCATTTGAGGTTATGCCTATTGTATTTTGGCCTTTTCTCCCAAGGCCTCTCCATCAAGTGTTCAACGCTTATTTGCCAATGGGTAGCAGAGGGCTTTGTGAATGAAAACGAGATGTTTGTAGATCAAACACTTGAGGAAGAAGCAGAGGACTACTTAGCTGAGCTCATTCGTAGAAGTTTGATTAAAGTCAACGTTGTGTCTGTCAATGGCAAGGCTAAAAGTTGCAGGGTCCATGATTTGATGCATGACTTTATTGTCAGAAAGTGTGAGGAGCTAAACTTTTGCCAAGTGGTGAACAAGCAAGAGTTCAGATTTCATGAATGGACCAGGCGTATAGCAATCCAGAATATCGATGAACGTGCTTTTACTGGAAACAATCAAAGTTCTGTTCGAGTGCGGTCGTGTGTTGGTTTTGGCATTGAACAACTTTCAGAATCTGTGCTGAAATCTTTGGTCTCCAGTTTCAATCTCTTGGTGACATTAGGCCTCGAATATTTGCCACTTGATCATCTTCCTGAAGCTGTAGGAGACTTACTGAATTTGAAGTATTTGAGTTTAAGGAAGACAAAAATCAAGACAATTCCCAGGACCATTGGCAAGCTTCAAAAGCTGCAAACTCTAAACCTTAGAGATACCAAAGTACTTGAGCTACCTGTGGAAATCAACAAGCTTGTTAAGCTGCGACATCTTTTATCTTACTCCTTTGGTTCCAGCCAGCATCAGCAGCATTTATTTGGCTTCAGTTTGAATGGAGGAATTGAGGGTTTAACAGATTTGCAGAGTCTTGCCATGGTGAATACAAGAACAGCTAACGGGGATGGTATTATTCGAGAAATGGAGAATATGATCAACATGAGGAAGTTGGGCATTGTTGAGTTAAGTGAAGTCAATGGAAATGGTGTTTGCAATGCCATAAAGAATATGCCCAACCTTTGCTCTCTATCCATCAAGGCAGCCGAAAACTGCAGATTTCTTGCGTTGCAAGAATTAGTTGATCCTCCTGCTAACCTCCAACGTCTTTACCTGAATGGGCCTCTGAAGGAATTGCCAGAATGGATTCTCAAGAATCTTGTTAAGTTACACTTGATTGGGTCAAGACTAGCTGAAGATCCTTTGCCTAAACTTAAAGGCTTGCCAGAATTGATGGAACTCCATCTTGATCACTTTTGTGAAAGTGAAGAGGTACATTTTAAGTGTGGTTGGTTTGAGAAACTAAAGGATTTAACCTTGCTGAGGATGAATACTTTGAGGACTTTAAAGATAGAAAAAGGGACACTATCTAACCTTGAAGTTTTAAGGCTGGGGTCCAGCCCTCAAATGAAAGATGCTGTTGATATCCAAAATTTGGAAGCTCTGAAGAATCTTTACCTCATTGACATGCCAAGACAATTTGCAAATGATGTTTCCACCGCAATAAAGAAAAATACTACACTGGATATTTCTTCACCTTTGCTCCCTCCAAGGCGCCGCCCTGATCATCCCTTGATCATTCCTCGCAGGGGGAAAATGGTCAAAATTAGCGTATTTCAAGGTATTGCATTGGCGGCTAAGGACATGGTCAAACTCTATTTACGAGTTGACTCGCGTCGAGTCTACGTCGGCTCTACGAGTTTACTTAGACCCGCGAGTTTGACAACCTTCGCCAATGTTGAGAATTGGTTTAGATTTCGGTTCCCGGATAGCGAATTTGTGAATCACCTATATTTCTTCAAACTCCCAATGCTGCCGGGTATTGAAGTGAATTTTCTGAGGCTGTGTTTCGAACGGCTTATGTGGCGTCAACCACCGTGA 3072 0.4251 MASVAVDSLIMKLTRLLNEEVTLLKEVRKKVEGVKNELSLIQAYLKDADAKADIGDTSSHAIKVWVKQLRHAAFHIEDAVDFYMIKLAPHPSQRHGVLSKFYLAIRSVVPRHRITSEIENVTSAIRKLYEDKQALGLTLTPSSSEQNVVARTRYDLRMGALFIREDELVGIDYAMNLLTNWLLHGEAKPTVISVVGGGGLGKTAIVRNLYNKLKEDFDCYAWITVSHSSKEEHLLTTIQTLYENDGKSYPVEGTRGKEVDMHTLIEKLRGYLQGKRYMIVFDDVWEINFWECMEFALPADTNISSRIIITTRDRGIAEFCRRSAPVRIHELKPLLDEDALKLFLLKTFQFDLHGCPEDLNELSERFVKRCEGVPLAIVVISGLLSTKEKTVSEWQKVYDSLRSKFSSDPHLRSFYLVLLESYHDLPYHLRLCLLYFGLFSQGLSIKCSTLICQWVAEGFVNENEMFVDQTLEEEAEDYLAELIRRSLIKVNVVSVNGKAKSCRVHDLMHDFIVRKCEELNFCQVVNKQEFRFHEWTRRIAIQNIDERAFTGNNQSSVRVRSCVGFGIEQLSESVLKSLVSSFNLLVTLGLEYLPLDHLPEAVGDLLNLKYLSLRKTKIKTIPRTIGKLQKLQTLNLRDTKVLELPVEINKLVKLRHLLSYSFGSSQHQQHLFGFSLNGGIEGLTDLQSLAMVNTRTANGDGIIREMENMINMRKLGIVELSEVNGNGVCNAIKNMPNLCSLSIKAAENCRFLALQELVDPPANLQRLYLNGPLKELPEWILKNLVKLHLIGSRLAEDPLPKLKGLPELMELHLDHFCESEEVHFKCGWFEKLKDLTLLRMNTLRTLKIEKGTLSNLEVLRLGSSPQMKDAVDIQNLEALKNLYLIDMPRQFANDVSTAIKKNTTLDISSPLLPPRRRPDHPLIIPRRGKMVKISVFQGIALAAKDMVKLYLRVDSRRVYVGSTSLLRPASLTTFANVENWFRFRFPDSEFVNHLYFFKLPMLPGIEVNFLRLCFERLMWRQPP 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121071g00007 1023 Coils Coil 17 37 - -
Stsc121071g00007 1023 CDD RX-CC_like 2 128 IPR038005 -
Stsc121071g00007 1023 SUPERFAMILY L domain-like 503 908 - -
Stsc121071g00007 1023 FunFam Probable disease resistance protein At1g63360 422 514 - -
Stsc121071g00007 1023 Pfam Rx N-terminal domain 5 94 IPR041118 -
Stsc121071g00007 1023 Gene3D - 419 516 IPR036388 -
Stsc121071g00007 1023 Pfam NB-ARC domain 173 405 IPR002182 GO:0043531
Stsc121071g00007 1023 PANTHER DISEASE RESISTANCE PROTEIN RP 34 848 IPR044974 GO:0006952
Stsc121071g00007 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 436 IPR027417 -
Stsc121071g00007 1023 Gene3D - 334 418 IPR042197 -
Stsc121071g00007 1023 Gene3D - 4 115 - -
Stsc121071g00007 1023 Gene3D - 148 326 IPR027417 -
Stsc121071g00007 1023 PRINTS Disease resistance protein signature 370 384 - -
Stsc121071g00007 1023 PRINTS Disease resistance protein signature 271 285 - -
Stsc121071g00007 1023 PRINTS Disease resistance protein signature 191 206 - -
Stsc121071g00007 1023 PRINTS Disease resistance protein signature 626 642 - -
Stsc121071g00007 1023 Gene3D Ribonuclease Inhibitor 547 915 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121071g00007 Stsc-Chr121071 38191 42380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121071g00007 192 377 WRKY Transcription Factor Family AT5G45050 28.497 1.16e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121071g00007 K13457 - zju:107416818 645.195