Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121071g00001 ATGGCGGCACACGTTATGGTCCTTGCCAATAAATCAATTGAAGATTTGATGGGGTCTAACTCTGAGGTTCATTTTTCTGGATTTCACATGGATTGCTTAGAGCAAAGGAAAGCCGGCATGGAGCAACCAACAACTTCAGAAGATGATATGTATAAACATCCTTTCGTTATAGGTGTTGCTGGTGGAGCAGCATCTGGCAAGACCGCCGTTTGTGATATGATTATTCAGCAGCTTCATGATCAAAGAGTTGTACTTGTTAATCAGGATTCATTTTACCATAATTTGACTGAGGAGGAACTTACAAGAGTACAAGATTACAACTTTGACCATCCTGAAGCTTTTGATACTGAGCAGTTGCTAAGTGTCATGGACAAGTTGAAGCATGGTCAAGCAGTAAATATTCCAAAGTATGACTTTAAGGGTTACAAGAGCGGTGTGTCTCCGGCAAGAAGGGTAAACCCCGCCGATGTTATAATTTTGGAAGGGATACTTATTTTCCATGATCCTCGTGTTCGCGCATTGATGAATATGAAGATATTTGTTGATACAGATGCTGATGTTCGGCTCGCAAGAAGAATTAGGCGTGATACTGCCGAGAAGGCTCGCGATATTGCAACAGTTCTGGATCAGCATATTCGAACAAAACTCGGTCAGCATGATCTGTGTAAAATATATCCTAATTTATACGTCATTCAGTCAACTTTTCAGATGCGGGGTATGCATACCCTCGTACGTGATTCTAAGACAACAAAGCATGATTTTGTATTCTATTCTGACCGTTTGATCCGTTTGGTTGTAGAACATGGCCTAGGCCATCTGCCATTTACAGAGAAACAAGTAATCACTCCTACTGGGTCTGTATACAGTGGTGTGGATTTTTGTAAGAGGTTGTGCGGCGTTTCCATCATCAGGAGTGGGGAGAGTATGGAGAATGCTTTGCGCGCATGCTGCAAAGGTATCAAGATTGGGAAGATTCTTATTCATAGAGAAGGAGACAACGGTCAACAGCTAATATATGAAAAGTTGCCGAATGATATCTCAGATAGGCATGTGTTATTGTTGGATCCTATCTTAGGCACAGGTAATTCGGCTGTTCAAGCGATTTCTTTACTATTAAGAAAGGGTGTACCAGAGTCCAACATTATATTTCTCAATCTTATATCAGCACCTCAAGGTGTTCATGTGGTCTGCAAAAGCTTTCCAAGAATAAAAATCGTGACGTCTGAGATCGACATTGGTTTGAACGAAGATTTCCGCGTTATTCCTGGCATGGGAGAGTTTGGGGATAGGTATTTTGGAACAGATGATGATGACCTGCAAGTTGTGGCCCCTTCTTAA 1338 0.4163 MAAHVMVLANKSIEDLMGSNSEVHFSGFHMDCLEQRKAGMEQPTTSEDDMYKHPFVIGVAGGAASGKTAVCDMIIQQLHDQRVVLVNQDSFYHNLTEEELTRVQDYNFDHPEAFDTEQLLSVMDKLKHGQAVNIPKYDFKGYKSGVSPARRVNPADVIILEGILIFHDPRVRALMNMKIFVDTDADVRLARRIRRDTAEKARDIATVLDQHIRTKLGQHDLCKIYPNLYVIQSTFQMRGMHTLVRDSKTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYSGVDFCKRLCGVSIIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLLRKGVPESNIIFLNLISAPQGVHVVCKSFPRIKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDLQVVAPS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121071g00001 445 Gene3D - 7 217 IPR027417 -
Stsc121071g00001 445 CDD PRTases_typeI 292 407 IPR000836 -
Stsc121071g00001 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 216 IPR027417 -
Stsc121071g00001 445 Gene3D - 218 434 IPR029057 -
Stsc121071g00001 445 FunFam Uridine kinase 51 221 - -
Stsc121071g00001 445 CDD UMPK 56 214 IPR000764 -
Stsc121071g00001 445 Pfam Uracil phosphoribosyltransferase 233 434 - -
Stsc121071g00001 445 Pfam Phosphoribulokinase / Uridine kinase family 56 215 IPR006083 GO:0005524|GO:0016301
Stsc121071g00001 445 PRINTS Uridine kinase signature 129 144 - -
Stsc121071g00001 445 PRINTS Uridine kinase signature 54 71 - -
Stsc121071g00001 445 PRINTS Uridine kinase signature 84 95 - -
Stsc121071g00001 445 PRINTS Uridine kinase signature 200 211 - -
Stsc121071g00001 445 PRINTS Uridine kinase signature 186 196 - -
Stsc121071g00001 445 SUPERFAMILY PRTase-like 218 435 IPR029057 -
Stsc121071g00001 445 FunFam Uridine kinase 219 434 - -
Stsc121071g00001 445 PANTHER URIDINE KINASE 46 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121071g00001 Stsc-Chr121071 3470 8290 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121071g00001 8 437 PRT Gene Family AT4G26510 74.630 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121071g00001 K00876 - gmx:100798205 782.711