Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121070g00003 ATGTTTGGGAGGGCGCCAAAGAAGAGCGATAACACCAAGTACTATGAGATCCTCGGAGTATCGAAGGACGCTTCTCAGGACGATTTGAAGAAGGCTTACAAGAAAGCCGCCATCAAGAATCATCCTGACAAAGGAGGTGACCCTGAGAAGTTTAAAGAGCTGGCACATGCTTATGAGGTGCTGAGTGACCCAGAGAAGCGTGAGATTTATGATCAATATGGCGAAGATGCACTTAAGGAAGGAATGGGTGGCGGTGGCGGAGGCCATGATCCATTTGATATCTTCCAGTCTTTCTTCGGTGGGAGTGCATTTGGCTCTGGTGGTGGCAGTAGAGGACGGAGGCAGAGACGCGGAGAGGATGTGGTTCACCCCCTGAAGGTCTCTTTGGAGGACCTTTACCTTGGGACTTCCAAGAAGCTCTCGCTTTCACGGAATGTCTTGTGCTCTAAATGCAACGGGAAAGGGTCGAAATCTGGAGCTTCAATGACATGTGCTGGCTGTCAAGGTACTGGTATGAAGGTTTCTATTAGGCATCTTGGTCCCTCTATGATTCAGCAAATGCAGCATCCTTGCAATGAATGCAAGGGTACCGGAGAAACAATCAATGAGAAAGACCGGTGCCCACAATGCAAGGGTGAGAAGGTTGTCCAAGAGAAGAAAGTGCTTGAGGTTCATGTGGAGAAGGGAATGCAGAACGGGCAGAAGATTACATTCCCTGGTGAAGCTGATGAAGCACCTGATACAGTCACAGGAGATATTGTCTTTGTCCTTCAACAGAAGGAACACCCCAAGTTCAAGAGAAGGGATGAAGACCTCTTTGTTGAGCACTCGCTGTCCCTGACCGAGGCTTTGTGTGGCTTCNNNNNNNNNNTTTGTGCTCACTCACTTGGATGGCCGGCAACTTCTTATCAGGTCGAATCCTGGAGAAGTTATTAA 936 0.4829 MFGRAPKKSDNTKYYEILGVSKDASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAHAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFQSFFGGSAFGSGGGSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVLCSKCNGKGSKSGASMTCAGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINEKDRCPQCKGEKVVQEKKVLEVHVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRRDEDLFVEHSLSLTEALCGFXXXXCAHSLGWPATSYQVESWRSY 311
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc121070g00003 311 CDD DnaJ 14 63 IPR001623 -
Stsc121070g00003 311 Gene3D - 148 214 - -
Stsc121070g00003 311 FunFam dnaJ protein homolog 10 110 - -
Stsc121070g00003 311 SUPERFAMILY HSP40/DnaJ peptide-binding domain 119 263 IPR008971 GO:0006457|GO:0051082
Stsc121070g00003 311 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 145 217 IPR036410 -
Stsc121070g00003 311 CDD DnaJ_zf 148 214 IPR001305 GO:0031072|GO:0051082
Stsc121070g00003 311 ProSiteProfiles Zinc finger CR-type profile. 135 219 IPR001305 GO:0031072|GO:0051082
Stsc121070g00003 311 Pfam DnaJ central domain 148 214 IPR001305 GO:0031072|GO:0051082
Stsc121070g00003 311 PRINTS DnaJ domain signature 15 33 IPR001623 -
Stsc121070g00003 311 PRINTS DnaJ domain signature 66 85 IPR001623 -
Stsc121070g00003 311 PRINTS DnaJ domain signature 46 66 IPR001623 -
Stsc121070g00003 311 Gene3D DnaJ domain 10 110 IPR036869 -
Stsc121070g00003 311 FunFam Chaperone protein dnaJ 3 215 255 - -
Stsc121070g00003 311 Pfam DnaJ C terminal domain 122 287 IPR002939 -
Stsc121070g00003 311 SUPERFAMILY Chaperone J-domain 8 110 IPR036869 -
Stsc121070g00003 311 Gene3D - 111 260 - -
Stsc121070g00003 311 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 11 288 IPR044713 GO:0006457|GO:0030544
Stsc121070g00003 311 FunFam DnaJ subfamily A member 2 148 214 - -
Stsc121070g00003 311 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Stsc121070g00003 311 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Stsc121070g00003 311 CDD DnaJ_C 119 287 - -
Stsc121070g00003 311 Pfam DnaJ domain 13 71 IPR001623 -
Stsc121070g00003 311 SMART dnaj_3 12 66 IPR001623 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc121070g00003 Stsc-Chr121070 26367 28845 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121070g00003 14 73 C2H2 Transcription Factor Family AT1G74250 44.928 4.03e-12 65.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121070g00003 K09503 - twl:120002231 495.352