Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121068g00010 ATGCAATTAGCTTCAAATGCTGACAAGGAAGAGTGTTCAGAATCCGAACCCATCTTGAATCAGCATCTAAATTTGCATTATGGAGGAGGAGGAGCAGAGTCTTCATTTTCCTGTGAAATCATTGCTGCTGCTAACGATGATTCACACCCTGTTCCTCCTGATGAGACCTGTCATCTGGTAAATGCGGATCAGCCACAGTGCCGGATATGCCTTGATATAGGAGTTCTTTTAGGAGAAGATTTGATCGCGCCTTGCCATTGCAAAGGCACGCAAAAGTACGTCCACAGATCATGTCTAGATAATTGGCGGTCTACAAAGGAGGGCTTTGCTTTTTCTCACTGTACAGAATGTCGAGCTGTCTTCATATTACGTGCAAATGTCCCACCAGATCGGTGGTGGTTGAGATTAAAATTTCAGTTCCTTGTTGCCAGAGATCATGCATTCATTTTCATAATTGTTCAACTGGTTGTTGCTTTCTTGGGGGTGCTTGTGTATAAATTTTACGGAGATGAACTAAGGGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCCGTTCTAGCCATTGTTTTGGTGGGATTGCTCTATGGATTCTTCATAGCCATAATATGTGGTCAAAGAATCAATGAACGCCACTACCATGTTCTTGCAAAACAAGAATTGACAAAGGAATATGTGGTAGAAGATCGAGAACATGTGAAGAATGTGCCTGAACTTGATCCCAGCCATGTGACAGAGCTGAGAATGTTGGGCCTTTACTAA 774 0.4199 MQLASNADKEECSESEPILNQHLNLHYGGGGAESSFSCEIIAAANDDSHPVPPDETCHLVNADQPQCRICLDIGVLLGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121068g00010 257 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 190 257 - -
Stsc121068g00010 257 SMART ringv_2 66 118 IPR011016 GO:0008270
Stsc121068g00010 257 ProSiteProfiles Zinc finger RING-CH-type profile. 59 124 IPR011016 GO:0008270
Stsc121068g00010 257 Pfam RING-variant domain 67 117 IPR011016 GO:0008270
Stsc121068g00010 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 129 IPR013083 -
Stsc121068g00010 257 SUPERFAMILY RING/U-box 62 121 - -
Stsc121068g00010 257 CDD RING_CH-C4HC3_MARCH 67 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121068g00010 Stsc-Chr121068 59268 65619 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121068g00010 33 216 C3H Transcription Factor Family AT1G50440 66.495 1.50e-87 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121068g00010 - - gmx:100789593 473.011