Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121068g00007 ATGGGCGCGCGCTCGGCTTTGGTTGTGCGCGCACCTGCAGCATCCAATAATGTCCAGTTATGGTTCACGTTCGTTAAGATTTTAATTGCTCTTTTTGGAATTCTATCACCGTGCTATTCCTATTCGGATGCTGAGGCGCTCTTGAAGTTCAGGGCTTCATTGAGAAATGCGGTTGCCCTCAGCAGCTGGGATCCATCCATAAATCCAAACCCACCGTGCTCTGGCAACATTACCAGTTGGGTGGGTCTCTATTGTAATCAAGACAAGGTTCGGGGGTTACGCCTTGAGAGCATGGGCCTCAACGGCAACATTGACGTGGCTTCTCTCTCTTCAATGCCCGCTTTGCGGATGCTTAGCCTGATGAACAATACCTTTGCGGGTCCCTTGCCCAACATCAAGATGCTGCCTAATTTGAAGGCCCTCTACCTGTCCTTTAATCATTTCTCTGGAGACATATCTGATGATGCATTTGCAGGTTTTAGTCGATTGAAGAAACTTTATTTGGCAAATAACGACTTCACTGGTAAAATTCCATCTTCCATTGCTGCATTGCCTAATCTCCTATACCTCAGGCTTGATGGTAACAAGTTTCATGGCCAAATTCCTGATTTTCCACGCGGCCATGATTTAATGACCTTCAACGTCGCTAACAATGATTTAGAGGGCCCCATCCCGACCAATCTAACCACCTTCGGTCCTGCCTCCTTTAGCGGAAACAAACGTTTATGCGGGCCACCACTGACAAATGTATGCCCGGCTACGACAGGAAGCCAGGATGGCCACGTTATGAAAACTATATTGATTGTGCTAGGGGTAGTAGTGGTTGTAGCTATCCTGGTTGCAGTGTTAGTCATATGGCGCTTGAGACTCAAGTCACGCAATCACAATCAAATAAATAATCATGAGGTCCAAAATTTCCAAGGCCAGACCTCCGACAAGTACGTTCCGCCCGTTTACGTCAAAACCAAAAGCCTAGCAGAACACTATGATGCTGCTACAACTCCTAAGAAGGTGCTCAGTTCTGGGCATTCCAAGAAGGTGGAGCAAGGCAAGCTCATATTCCTGAATTGTGACAGCGGAGTCAAGTTTGATTTGCCAGATTTGTTAAGGTCCTCCGCCGAAATTCTAGGCAGTAACACATTTGGCTCTTCCTACAAGGCCGTTATCTTGGACGGTCAAGCTTTGGTTGTCAAGAGGTACAAGCAAATGAACAATGTGCCCAGAGAGGAGTTCCACGAACACATGAGAAGGCTTGGCAATCTCAACCACCTCAATATTCTGCCCTATATGGCCTATTACTATAGGAAAGAAGAGAAGCTCTTGATCTCTGTCTATGTTCAAAATGGTTGCTTAGCCAGCCATCTTCATGGGAATCGCAACAAAGAAAAGCAGGGCCTTGACTGGCCAACCAGATTGAAAATAGTGAAAGGTGTAGCGAGGGGATTGGCCTACCTATACAACGCACTCCCAAGCGTTGTTGCGCCTCATGGTCACCTCAAATCTTCGAATGTGCTTTTGGATGAATCTTTTGAGCCCCTACTGACTGATTACGGGCTCAGTCCTTTGATCAACCTTGATCGTGCCCAACAAGTCATCATGCCTTACAAATCACCCGAGTATGCTCAACTCGGGCGCATAACAAGGAAGACTGATATGTGGAGTTTTGGAATTCTGATTCTGGAGATCTTGACAGGTAAATTTCCAGAGAACTATCTTGCACAGACACATAACAGTGATTCGGACATTGCCAACTGGGTCAATACCATGGTTACCGAGAAGCGCACCAGCGAAGTTTTTGACGCAGACATGGGAGGATTTGGCAATAGTAAAGCTGAATTGCTGAAGCTCTTAAAGATTGGCTTGAGTTGTTGTGAGGAGAATGTGGAAAGAAGGTTAGATATGAAGGAAGCTCTTGACCAAATCGAAGACTTGAAGGAGGTTGAAAGTGATGGAGAATACTCTTCTACTTTAGTCACTTCCGACAGGGATGCCTATAGAGCTGTGTGA 2007 0.4619 MGARSALVVRAPAASNNVQLWFTFVKILIALFGILSPCYSYSDAEALLKFRASLRNAVALSSWDPSINPNPPCSGNITSWVGLYCNQDKVRGLRLESMGLNGNIDVASLSSMPALRMLSLMNNTFAGPLPNIKMLPNLKALYLSFNHFSGDISDDAFAGFSRLKKLYLANNDFTGKIPSSIAALPNLLYLRLDGNKFHGQIPDFPRGHDLMTFNVANNDLEGPIPTNLTTFGPASFSGNKRLCGPPLTNVCPATTGSQDGHVMKTILIVLGVVVVVAILVAVLVIWRLRLKSRNHNQINNHEVQNFQGQTSDKYVPPVYVKTKSLAEHYDAATTPKKVLSSGHSKKVEQGKLIFLNCDSGVKFDLPDLLRSSAEILGSNTFGSSYKAVILDGQALVVKRYKQMNNVPREEFHEHMRRLGNLNHLNILPYMAYYYRKEEKLLISVYVQNGCLASHLHGNRNKEKQGLDWPTRLKIVKGVARGLAYLYNALPSVVAPHGHLKSSNVLLDESFEPLLTDYGLSPLINLDRAQQVIMPYKSPEYAQLGRITRKTDMWSFGILILEILTGKFPENYLAQTHNSDSDIANWVNTMVTEKRTSEVFDADMGGFGNSKAELLKLLKIGLSCCEENVERRLDMKEALDQIEDLKEVESDGEYSSTLVTSDRDAYRAV 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121068g00007 668 Gene3D Transferase(Phosphotransferase) domain 1 446 662 - -
Stsc121068g00007 668 FunFam Pollen receptor-like kinase 1 446 655 - -
Stsc121068g00007 668 Pfam Protein kinase domain 373 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121068g00007 668 Pfam Leucine rich repeat N-terminal domain 42 86 IPR013210 -
Stsc121068g00007 668 Pfam Leucine rich repeat 136 197 IPR001611 GO:0005515
Stsc121068g00007 668 Gene3D Ribonuclease Inhibitor 38 206 IPR032675 -
Stsc121068g00007 668 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 30 649 IPR046959 -
Stsc121068g00007 668 Gene3D Phosphorylase Kinase; domain 1 357 445 - -
Stsc121068g00007 668 SUPERFAMILY L domain-like 70 241 - -
Stsc121068g00007 668 FunFam Nuclear pore complex protein NUP107 40 203 - -
Stsc121068g00007 668 SUPERFAMILY Protein kinase-like (PK-like) 373 643 IPR011009 -
Stsc121068g00007 668 ProSiteProfiles Protein kinase domain profile. 370 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121068g00007 668 Gene3D Ribonuclease Inhibitor 207 259 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121068g00007 Stsc-Chr121068 46532 49150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121068g00007 12 661 Receptor kinase-like Gene Family AT5G35390 46.908 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc121068g00007 Pkinase 7.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121068g00007 - - gmx:100801053 895.19