Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121059g00012 ATGGCCGGCATAGACTTGGGTTCAGCATCACACTTTGTTCATCACCTTCAACGCCCTGACCTTGAAGATGATGATAATAACCAAGACCAAGACCCGAGCAACAACCATCACGAAGGCCTTGACCTAATTTCACCAAATCAAGGCCCCGGCGATGTTGTTGCTCGGAGACCAAGAGGTAGACCTCCGGGCTCCAAGAACAAGCCTAAGCCACCGGTGATCATCACAAGGGAGAGTGCAAACACTCTTAGGGCACACATCCTTGAAGTTAGCAGCGGTTGCGATGTGTTTGACTCTGTGGCCACCTATGCAAGAAAACGTCAAAGGGGGATCTGTGTCCTTAGCGGTAGTGGAACCGTCACCAACGTCACACTCCGACAGCCAGCAGCTGCCGGAGCAGTTGTGACGCTTCATGGAAGATTTGAGATACTTTCCTTGTCAGGATCCTTCCTACCACCTCCTGCTCCACCAGGGGCTACAAGTTTGACTGTATTTCTTGGTGGAGGCCAGGGCCAGGTGGTAGGAGGAAATGTTGTTGGGCCTTTAGTGGCTTCTGGGCCTGTTATTGTTATTGCCTCGTCATTCACTAACGTGGCATATGAGAGGTTGCCCTTAGATGAAGATGAGACTATTCAGATGCAGCAAGGGCAACCTTCTGCTGGTGGCGGTGGCGGTGGTGTTAATAACTCTTTTCCAGACCCTTCTTCAGGGCTACCGTTCTTCAATCTACCTCTAAACATGCCTAATATGCCGGTCGATGGTTGGGCCGGTGGAAACTCTAGTGGTGGAAGACAATCTTTTTGA 801 0.5081 MAGIDLGSASHFVHHLQRPDLEDDDNNQDQDPSNNHHEGLDLISPNQGPGDVVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSSGCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTVFLGGGQGQVVGGNVVGPLVASGPVIVIASSFTNVAYERLPLDEDETIQMQQGQPSAGGGGGGVNNSFPDPSSGLPFFNLPLNMPNMPVDGWAGGNSSGGRQSF 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121059g00012 266 FunFam AT-hook motif nuclear-localized protein 82 209 - -
Stsc121059g00012 266 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 27 217 IPR014476 GO:0003680
Stsc121059g00012 266 MobiDBLite consensus disorder prediction 15 36 - -
Stsc121059g00012 266 Pfam Plants and Prokaryotes Conserved (PCC) domain 83 196 IPR005175 -
Stsc121059g00012 266 MobiDBLite consensus disorder prediction 15 73 - -
Stsc121059g00012 266 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 212 - -
Stsc121059g00012 266 MobiDBLite consensus disorder prediction 213 232 - -
Stsc121059g00012 266 CDD DUF296 83 158 IPR005175 -
Stsc121059g00012 266 Gene3D - 82 215 - -
Stsc121059g00012 266 ProSiteProfiles PPC domain profile profile. 79 216 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121059g00012 Stsc-Chr121059 51648 53214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121059g00012 1 266 AT-hook Motif Nuclear Localized (AHL) Family AT2G35270 57.947 1.91e-97 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121059g00012 - - gmx:100814613 399.053