Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121059g00011 ATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTCCCACATAATGAAATTGCCGCACAGATATGCCGTCAGGCTGGCCTAGTCAAGAGATTAGAGAAATCCGATAATCTTCTTGAGGGTGGAGAAGACGACAATTTTGCCATTGTGTTTGCTGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAAGAGAATGGCTCAATGGAGAGAGTGACCCTTTTCCTGAATCTGGCTAATGATCCCACAATCGAACGTATCATCACTCCTCGTATTGCTCTAACTACTGCTGAATATCTGGCATACGAATGTGGCAAGCATGTTCTCGTGATACTCACAGATATGAGTTCTTATGCCGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTGCCAGGACGACGTGGGTATCCTGGTTACATGTATACAGATCTTGCAACAATATACGAACGTGCCGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAGATTCCTATTCTGACTATGCCAAATGATGATATCACGCATCCAACTCCTGATCTTACAGGATACATTACTGAGGGACAGATATATATTGACAGACAGCTGCATAACAGGCAGATATATCCACCAATCAATGTCCTTCCCTCACTGTCTCGATTGATGAAGAGCGCCATCGGAGAGGGAATGACACGAAGGGATCATTCTGATGTATCCAACCAGCTCTATGCAAATTACGCCATTGGAAAGGATGTTCAGGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACTTGCTATATCTCGAATTTTTGGACAAATTCGAGCGCAAGTTTGTCACGCAAGGAGCTTATGACACCCGCAACATCTTCCAGTCACTAGATCTCGCGTGGACCTTGCTTCGGATCTTCCCCCGAGAGCTTCTTCACCGTATACCAGCCAAGACCCTCGACCAGTTCTACAGCCGAGATGCCGGTAATTGA 1008 0.4573 MNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGEDDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDAGN 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121059g00011 335 CDD V_A-ATPase_B 1 232 - -
Stsc121059g00011 335 CDD ATP-synt_V_A-type_beta_C 234 328 - -
Stsc121059g00011 335 ProSitePatterns ATP synthase alpha and beta subunits signature. 215 224 IPR020003 GO:0005524
Stsc121059g00011 335 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 1 224 IPR000194 GO:0005524
Stsc121059g00011 335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 230 IPR027417 -
Stsc121059g00011 335 Gene3D - 1 334 - -
Stsc121059g00011 335 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 1 332 IPR022879 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121059g00011 Stsc-Chr121059 43185 45888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121059g00011 1 335 Primary Pumps ATPases(2) AT4G38510 98.507 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121059g00011 K02147 - gmx:100793764 658.677