Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121056g00003 ATGGCCTCTTCAAGCTATTCGAGTTCACCCTGTGCTGCGTGCAAGTTCTTGAGGAGGAAATGCATGCCAGATTGCATCTTCGCGCCTTATTTCCCACCGGAAGAGCCTCAAAAGTTCGCGAACGTTCACAAGATCTTTGGTGCAAGCAACGTGAGCAAGCTTCTGAATGAGGTGCAACACCATCAGAGGGAGGATGCAGTGAACTCTCTGGCGTATGAGGCGGAGGCGCGGATTAAGGATCCGGTTTATGGCTGTGTTGGGGCCATTTCAGTGCTCCAACGGCAAGTGATTAGGCTCCAAAAGGAACTTGATGCCACCAATGCAGATCTGATCCGCTATACCTGTAATGAAATGCCGCCGTTGCAAGATGGGATGAGAAGAATTGGTGACGGTTCCACTCTTGCTCATCATTCTCCTACTGCTGCTTATTATTATCCATCTCCTTGGAGCAATGATCCTTGTGGGGATGCTGGGTTTCACAGAGGAGGTGGTAACAATATGTGA 504 0.496 MASSSYSSSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQHHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEMPPLQDGMRRIGDGSTLAHHSPTAAYYYPSPWSNDPCGDAGFHRGGGNNM 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121056g00003 167 Coils Coil 89 109 - -
Stsc121056g00003 167 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Stsc121056g00003 167 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Stsc121056g00003 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121056g00003 Stsc-Chr121056 35865 36368 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121056g00003 4 113 AS2 family AT3G27650 83.636 3.22e-67 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc121056g00003 LOB 1.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121056g00003 - - gmx:100306630 280.411