Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121053g00008 ATGAGCAGCCACAGCCATAGGAATCCACCACAACCTCGGCGCTACAGGGGCACGCGTCTCCGGGGTGGCAAGTGGGTGTCGGAGATAAGGCTGCAACGTAGCAAGAAACGCATTTGGCTTGGGACTTACCCAACACCTGAGATGGCTGCTGTGGCTCACGATGTTGCTACTCTTGCACTCAGGGGCCCCCAAGCCCATCTCAACTTCCCCGCTTTCATACTCTCTTATCCTATTCCTGCTTCCTTCCAAGATTCTGATATCCGCGCTGCGGCCGCCGTCGCTGCCTCCCTCTTCGCTCACCCACCACCTACCACTACCCCCACCACCACCACGCCACCTCCTCCGATTGTAACTAGTAATGATCAGAACACAATAAGTGCTGCTGCTGATGGTGGAGGGGATTATTTTGATGAGGATCAAGTTTTAAATATGCCGACTGTTATTGAAGACATGGCTAGGGGACTCCAGATTAGTCCCCCAAGGATCCCTTCTTTCGATTTCTCCGACGACCAAGATTATTCCGATCTCTATATCCTTTGGCAATCATAG 549 0.5264 MSSHSHRNPPQPRRYRGTRLRGGKWVSEIRLQRSKKRIWLGTYPTPEMAAVAHDVATLALRGPQAHLNFPAFILSYPIPASFQDSDIRAAAAVAASLFAHPPPTTTPTTTTPPPPIVTSNDQNTISAAADGGGDYFDEDQVLNMPTVIEDMARGLQISPPRIPSFDFSDDQDYSDLYILWQS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121053g00008 182 SUPERFAMILY DNA-binding domain 14 71 IPR016177 GO:0003677
Stsc121053g00008 182 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 180 IPR045277 GO:0003700
Stsc121053g00008 182 Pfam AP2 domain 15 62 IPR001471 GO:0003700|GO:0006355
Stsc121053g00008 182 SMART rav1_2 14 76 IPR001471 GO:0003700|GO:0006355
Stsc121053g00008 182 ProSiteProfiles AP2/ERF domain profile. 5 70 IPR001471 GO:0003700|GO:0006355
Stsc121053g00008 182 Gene3D AP2/ERF domain 13 71 IPR036955 GO:0003700|GO:0006355
Stsc121053g00008 182 CDD AP2 14 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121053g00008 Stsc-Chr121053 29351 30202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121053g00008 15 162 AP2-EREBP Transcription Factor Family AT5G52020 46.980 6.56e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc121053g00008 AP2 4e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121053g00008 - - adu:107466884 204.527