Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121051g00006 ATGGTTATAATCTTTCTCCAAAGAAAGCCATATGCAGCTAAGAACATTATTCTTGAGAAGCGTCGTAATTCAATTAAGGAGTCAGAATTATTAGATAATAAGCAACGTCAATATTCATATAATGAGGTTGTTAAGATGACCAACAACTTTGATAAGATTCTTGGGAGAGGTGGATTCGGAACAGTTTACCATGGCTTTATTGAGGACATTCAAGTGGCTGTCAAGATGCTTTCCCTATCATCAGTGCAAGGATATCAACAATTTGTTGCAGAGGTTAAGCTTCTAATGAGAGTGCACCACCGAAATCTGACTTCTCTTATTGGTTATTGCAAAGAAGAAAGCAATATAGGACTCATCTATGAATATATGGCTAATGGAAACTTAGATGAACATCTTTCAGGAAAAAACAATAAGGGGAAGTCCTTGAGCTGGGAAGATAGGCTTCGAATAGCATTGGATGCAGCCCAAGGATTGGAATATCTACATAATGGTTGTAAGCCACCTATAATCCACAGAGATGTGAAATGCTCAAATATTCTACTAAATGAGAACTTTCATGCCAAACTGGCGGATTTTGGATTATCCAAATGCTTTGCGACTGATAGCGATACTCATGTATCGACAATTGTTGCCGGAACTCCAGGCTACCTAGATCCTGAGTACACAACATCAAACAGGTTGACAGAGAAAAGTGATGTGTATAGCTTTGGAGTAGTTCTTTTAAAGATAATCACAGGTCAACCCATAATAATAGTAGTCGATGACATAACTCATCATCATATAAGTGAACGGGTTAACTCCATGGTTGTTGAAGGAGATATAACAAAAATTGTTGACTCAAGTTTACAAGGAAATTTTGACAGTAACTCTGCATGA 876 0.3733 MVIIFLQRKPYAAKNIILEKRRNSIKESELLDNKQRQYSYNEVVKMTNNFDKILGRGGFGTVYHGFIEDIQVAVKMLSLSSVQGYQQFVAEVKLLMRVHHRNLTSLIGYCKEESNIGLIYEYMANGNLDEHLSGKNNKGKSLSWEDRLRIALDAAQGLEYLHNGCKPPIIHRDVKCSNILLNENFHAKLADFGLSKCFATDSDTHVSTIVAGTPGYLDPEYTTSNRLTEKSDVYSFGVVLLKIITGQPIIIVVDDITHHHISERVNSMVVEGDITKIVDSSLQGNFDSNSA 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121051g00006 291 FunFam Lectin-domain containing receptor kinase A4.3 123 291 - -
Stsc121051g00006 291 Gene3D Phosphorylase Kinase; domain 1 34 122 - -
Stsc121051g00006 291 SMART serkin_6 48 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121051g00006 291 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Stsc121051g00006 291 PANTHER OS07G0107800 PROTEIN-RELATED 14 290 - -
Stsc121051g00006 291 ProSiteProfiles Protein kinase domain profile. 48 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121051g00006 291 SUPERFAMILY Protein kinase-like (PK-like) 28 286 IPR011009 -
Stsc121051g00006 291 Pfam Protein tyrosine and serine/threonine kinase 50 248 IPR001245 GO:0004672|GO:0006468
Stsc121051g00006 291 Gene3D Transferase(Phosphotransferase) domain 1 123 291 - -
Stsc121051g00006 291 FunFam Leucine-rich repeat receptor-like protein kinase 25 122 - -
Stsc121051g00006 291 ProSitePatterns Protein kinases ATP-binding region signature. 54 75 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121051g00006 Stsc-Chr121051 18653 20529 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121051g00006 34 291 Receptor kinase-like Gene Family AT1G51880 63.566 1.49e-116 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc121051g00006 PK_Tyr_Ser-Thr 5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121051g00006 - - ahf:112708723 493.812