Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121051g00004 ATGGCTGCAAAACTTGAAGGTGGAGCTTATCTCTCTTCTTTTGTTGATGCTATCTCGAAGAAGCTGTCTTCTTTACTTGAAGATGACTCTGTCCTCGACTCTACCCTGGAGTTGCTTCAAAGGTTGGATGATTGTCTATGTGATGTTGGACCTGTGCTTGATGATGCTGAGCTGAAGCAGTTCAGTAGCAATAGAGTGAAGAAGTGGCTCGTTGACCTCCAAGATTCTCTCTACATGGCTGATGACTTGGTGGATGAACTCTCCACTAAAGTTGCCACTGCCACTCCAACGGATCAAGGTAAGTCTAATATCTGGTCTCGCCTTGTTGATTCACTTAGTGAAAGTAGTGGTGCCAATGACATCAGAAAAGTAGTTGGCAAATTAGAGTCTATTGCAGAACGAAAAGCTAAACTTGGTTTGGAAAAGAGTGCCAAGTTGGACACATCATGGAGAATTCCATCCACATCTCACGTTGTTAGTTCTGAGATATTTGGTCGGGACCAAGACAAGGAGAACATAATCAAATTGTTGTTAGAGGATACCTCATGCGATGTTCAATTACCTGTGACTGGGATCCACATCTCTTCCTTTGTTGATGCTATTTCAAAGAAGTTGTGTTCAGTCCTTGAAGGAAACGACCATGCCCTGAAGTTATTGTTTCAAAGGTTGGATGATTGTCTTCTTGATGTTGAACCTGTGCTTCATGATGCTGAGCTGAAGCAGTTCCGCAACGAGAGAGTGAAGAAGTGGCTTGTTGATCTCCAAGATGCTCTCTATAAGGCTGATGACTTCCTCAAGGAACTCTCCACTAAAGTTGCCACTGCCACTCCACAGGATCCAGGTAACTCTTACTGGTCTGGCCCTGTTGATTCAATTATTTATGGTAGTGTTGCCAATGACATCGAAAACATAGTTGGCACACTAGAGTATCTTGTAGGACGAAAAGATAGACTTCGTCTGAAAGAGAGTGCCGAGTTGGATACATCGCTCGTTGTTAGTTCTGACAAATTGCTGTCAGATGATACATGCGCTGCTGAATCACCTGTGACTGTGATCCCCATTGTGGGTATGGGTGGGATAGGAAAAACTACTTTGGCTCAATTGATTTACAATGATGCCAAAGTCATGGCAAAATTTAAAACTAGAGCATGGGTGTGTGTTGCTGAAAATCCTGACCCTATTAATGTCACAAAAACAATAATAGGGGCAATAGATTCTTCTCCCTGTAACATAGATCATTTTGATTCACTTCAGACTATTTTGAAGAAGAAGTTGTCTGAAAAGACATTTTTAGTTGTTTTAGATGATGTCTGGGATGATCGACGAGACGCATGGGAGGAATTTTTGAAACCTTTTCAATATGGGAATAATGGGAGCAAGATTCTCCTAACAACCCGCAGTGAAAAGGTGGCTTCTGTATTCACATCTAACAATCTATACTATCGACTAAGTTTACTGTCGAAGGAAGATTGTTGGTCATTGTTTTTGAAGCATTCATCTATTTCTTCCAATTCTAAAGAATATGTAACTCTAGAACCAATTGGTAGAAAAATTGTTGAGAAGTGTAAGGGGTTACCTTTGGCTGTGAAGACACTTGGTGGGTTACTGCGCAATAACTCTAATGAAGGAGATTGGGAGAATATACTTGAAAGTGAAATTTGGGAATTGTCGGAAGATAAAAGTAAGATTGTTCCTGCATTAAGAGTTAGTTATCATTACCTCCCTTCACATTTAAAGTGTTGTTTTGTTTATTGCTCATTATATCCCGAAGATTATCAATTTGACAAAAACGAGTTGATTTTGCTATGGATGGCCGAAGATCTTTTACAACCAAAGAAAAATAACACATTAGAAAATATTGGATGTGCTTATTTTGATGAATTGGTTGCAAGGTCATTTTTTCAACCTTCCAGTAATAATGGAAAGTTATTTATAATGCATGATCTCATGCATGATCTAGCAATGTCTTTTGCTGGAAAATTCTTTCTCAAGCTCAAAAAATTTGGCAATCTACGCAAGATTGACCCCAAAACTCGTCATTTGTCATATGCTATAAATTATAAGTATAGCACTAAATTGTTTCAGGGGGGCAATAATAATAGAGCAGTACACATGAGAACATTTTTAGATCTTACTGACACTCTCCATGGTCACTCAATTGATATTGAAAGTGATTCTTGCCTCTTACAACAACAATTAGGGTGTTTAAGAGTTTTTTCATCTGGCCTCTTAAAAAAATTGCCGGATTCAATAGGTGAATTGATTCATTTGCGTCATTTAAATCTCTCCAAATCACCTATTGTGAAATTACCCGAGTCAATATGTAAATTATACAATCTCCAAACTCTGAAATTGAGGAAATGTACTGAGCTAGAAAGGCTTCCCAACCGCTTGCAAGATCTTGTGAATCTGCGCCACCTTGACATTCGAGGTGTTTATCGTCTGAGAGAGATGCCGAAAGGAATGAGCAACTTAATTTATCTAAACTTCTTGAGCGATTATATCATTGGTGAGCAAGAAGACAATGGGATAAGAGAATTGGGAACACTGGACCATCTTCATGGCTCATTTTACATTGCCAAGTTGGAGAACGTCAAGAATAGTGGTGAAGCTTTGGAGGCAATGATGGGTAAGAAGAAGCACATCAATGCTTTAAAATTGAAATGGCTTCGAGATGGAGATGGTGATGTTGATGATGTTGAAACCGAAAGAGATATACTTGTGAAGTTACAACCTAATCAAAACTTGAAAAAGTTATCAATTTATGGTTATCGGGGTGAAACATTCCCAGATTGGTTAGGCCTTTCTGGCTACTCCAAAATGACCAAATTGAGTCTGAATCGTTGTATGAATTGTCATGAGCTTCCTTCACTAGGGCAGTTACCCTCTTTACAGCATTTGGAGATTTCTAAACTTGATAGTTTGGAGGAAATTGATTTAGAGTTGTTTTTCAACAAAAACAGTGGAACATTTCAGCAGGAGACACCCTTCAAGTCTCTTGAAACTATGATCATTAAGGATATGTCTGTTTGGAGAGAGTGGCATTTTCCTGGTGACTTTGCTGGTTTTCCTCAACTTAAAATCCTTTCAATAATAAGTTGTCCGGTGTTAAGGAGAGATCTGCCTGCTCACCTTCCGGCTCTGGAGGAACTTACCATTGATGGATGTGAAGAGCTTGCATGTTCGCTGCCGAAGGCTCCCAAGCTTCACCAGTTATATGTAAAGGGTAATATGTCTTCTGGTACAGAACCACAATGTGCAGTAATTCTAGGAACCCAGCTGGCAAAGTATGCATTGGAGTGCTTGTCCCACATCCAACTGCCATGTGTCCAATATGTGAATATCAGTGAGTGTAAGTCAGCGATATCAATTTCATCAGATTATTTGCCAGCTTCATTACAATATCTGGAAATCTTTGGGTGTCCGGAAATAACAATATCAGAGCAACTGCAACACAAGTCGCTAACGGAGATAAAGGTAGAGGGAGGGTGGGGCTCACAAACGTTTCCATTGGGGGACCTTCCAAATCTGAAGAAGCTCGAATTATCTTATTGCAAAAACATGGAATATGTTGAGGTGTCATGTGCTCTTCCAAGTCTCCGTTATTTAAACATCTTAAGTTGCCACAGTTTAGTATCCTTGCCAGCGCTAGGGAGTGTTGCGCCTTGTCTAGAGGACCTACGTATAAACCAATGCTCAAAAATTGATTGTTTTACTGAGGAGTGGCTCCCTCCAAGTTTGAGAATACTTTATGTCACTGAGTGCCACAATCTTGCAAGTCGGATTGCATCAAAGGGTTTGCAGAGTGAAGGCCTTACCGACCTTTTGATTACTCGATGCAATGATGTAAAGTCATTTTCAAGAGAGGGTTGCCTTCCAGCTTCTCTTGAGTTTCTACAACTGTGGGAGTTACCGAATCTGGAAACTCTTGACTGCAAGGGGCTTCGCCATCTTACCTCTCTCAAAACTTTAAAGATTAACTACTGTGACAAGCTTGAGAATATCATAGAAGAACATTTGGTTGCCTCTATTGAAAATATCTACATAGGGAAATGTCCTTTGACGACTAAGCTGCAAGAGATGGAACACCCACGGATTCAATTCGTCACAGACGTGGAGTAA 4122 0.4 MAAKLEGGAYLSSFVDAISKKLSSLLEDDSVLDSTLELLQRLDDCLCDVGPVLDDAELKQFSSNRVKKWLVDLQDSLYMADDLVDELSTKVATATPTDQGKSNIWSRLVDSLSESSGANDIRKVVGKLESIAERKAKLGLEKSAKLDTSWRIPSTSHVVSSEIFGRDQDKENIIKLLLEDTSCDVQLPVTGIHISSFVDAISKKLCSVLEGNDHALKLLFQRLDDCLLDVEPVLHDAELKQFRNERVKKWLVDLQDALYKADDFLKELSTKVATATPQDPGNSYWSGPVDSIIYGSVANDIENIVGTLEYLVGRKDRLRLKESAELDTSLVVSSDKLLSDDTCAAESPVTVIPIVGMGGIGKTTLAQLIYNDAKVMAKFKTRAWVCVAENPDPINVTKTIIGAIDSSPCNIDHFDSLQTILKKKLSEKTFLVVLDDVWDDRRDAWEEFLKPFQYGNNGSKILLTTRSEKVASVFTSNNLYYRLSLLSKEDCWSLFLKHSSISSNSKEYVTLEPIGRKIVEKCKGLPLAVKTLGGLLRNNSNEGDWENILESEIWELSEDKSKIVPALRVSYHYLPSHLKCCFVYCSLYPEDYQFDKNELILLWMAEDLLQPKKNNTLENIGCAYFDELVARSFFQPSSNNGKLFIMHDLMHDLAMSFAGKFFLKLKKFGNLRKIDPKTRHLSYAINYKYSTKLFQGGNNNRAVHMRTFLDLTDTLHGHSIDIESDSCLLQQQLGCLRVFSSGLLKKLPDSIGELIHLRHLNLSKSPIVKLPESICKLYNLQTLKLRKCTELERLPNRLQDLVNLRHLDIRGVYRLREMPKGMSNLIYLNFLSDYIIGEQEDNGIRELGTLDHLHGSFYIAKLENVKNSGEALEAMMGKKKHINALKLKWLRDGDGDVDDVETERDILVKLQPNQNLKKLSIYGYRGETFPDWLGLSGYSKMTKLSLNRCMNCHELPSLGQLPSLQHLEISKLDSLEEIDLELFFNKNSGTFQQETPFKSLETMIIKDMSVWREWHFPGDFAGFPQLKILSIISCPVLRRDLPAHLPALEELTIDGCEELACSLPKAPKLHQLYVKGNMSSGTEPQCAVILGTQLAKYALECLSHIQLPCVQYVNISECKSAISISSDYLPASLQYLEIFGCPEITISEQLQHKSLTEIKVEGGWGSQTFPLGDLPNLKKLELSYCKNMEYVEVSCALPSLRYLNILSCHSLVSLPALGSVAPCLEDLRINQCSKIDCFTEEWLPPSLRILYVTECHNLASRIASKGLQSEGLTDLLITRCNDVKSFSREGCLPASLEFLQLWELPNLETLDCKGLRHLTSLKTLKINYCDKLENIIEEHLVASIENIYIGKCPLTTKLQEMEHPRIQFVTDVE 1373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121051g00004 1373 Pfam NB-ARC domain 349 571 IPR002182 GO:0043531
Stsc121051g00004 1373 SUPERFAMILY L domain-like 1106 1359 - -
Stsc121051g00004 1373 Pfam Rx N-terminal domain 198 274 IPR041118 -
Stsc121051g00004 1373 Pfam Rx N-terminal domain 14 95 IPR041118 -
Stsc121051g00004 1373 Gene3D Ribonuclease Inhibitor 709 1093 IPR032675 -
Stsc121051g00004 1373 FunFam Probable disease resistance protein At1g61300 316 478 - -
Stsc121051g00004 1373 PANTHER DISEASE RESISTANCE PROTEIN RP 226 1057 IPR044974 GO:0006952
Stsc121051g00004 1373 PRINTS Disease resistance protein signature 424 438 - -
Stsc121051g00004 1373 PRINTS Disease resistance protein signature 1172 1188 - -
Stsc121051g00004 1373 PRINTS Disease resistance protein signature 522 536 - -
Stsc121051g00004 1373 PRINTS Disease resistance protein signature 351 366 - -
Stsc121051g00004 1373 Gene3D - 570 656 IPR036388 -
Stsc121051g00004 1373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 585 IPR027417 -
Stsc121051g00004 1373 SUPERFAMILY L domain-like 646 1086 - -
Stsc121051g00004 1373 Gene3D - 325 479 IPR027417 -
Stsc121051g00004 1373 Gene3D Ribonuclease Inhibitor 1094 1368 IPR032675 -
Stsc121051g00004 1373 Gene3D - 15 121 - -
Stsc121051g00004 1373 Gene3D - 198 292 - -
Stsc121051g00004 1373 Gene3D - 485 569 IPR042197 -
Stsc121051g00004 1373 FunFam Probable disease resistance protein At1g63360 571 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121051g00004 Stsc-Chr121051 5014 9260 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121051g00004 336 836 WRKY Transcription Factor Family AT5G45050 22.727 3.30e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121051g00004 - - ahf:112708719 1496.49