Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121051g00001 CTGCGGACATTATTCTTGGGAAGTGTCGTAATTCAATTAAGGGGTCAGAATTGGAATCTAAGCAACAGTTTACCATGGCTTTGTCGAGGACACTCAAGTGGTTGTCAAGATACTTTCCCTATCATCGGTGCAAAGATATCAACAATTTGTTGCAGAGGAAAAACCAATACGGGAAAGCCCTTGAATTGGGAAGATAGACTTCAAATGGCATTGGATGCAGCCCAAGGACTGGAATATCTGCATAATGGCTGTAAGGCACCTATAATCCACAGAGATGTAAAATGCACAAATATTCTATTAAATGGAAACCTCCATGCCAAACTGGCAGATTTTGGATTATCCAAATGCTTTGCAGCTGACGGTGATACGCATGTGTCGACAATTGTGGCTGGAACTCCAGGCTACCTAGATCCTGAGTACACAACATCAAATAGATTGACAGAGAAAAGTGATGTGTATAGTTTTGGAGTAGTTCTTTTAAGGATAATCACAGGTCAAGCAGTGATAATAGGAACGGAAGACATGACTCATCGTATAAGTCAGCAGGTTAAAGTCCATGATTGCTGA 567 0.4109 LRTLFLGSVVIQLRGQNWNLSNSLPWLCRGHSSGCQDTFPIIGAKISTICCRGKTNTGKPLNWEDRLQMALDAAQGLEYLHNGCKAPIIHRDVKCTNILLNGNLHAKLADFGLSKCFAADGDTHVSTIVAGTPGYLDPEYTTSNRLTEKSDVYSFGVVLLRIITGQAVIIGTEDMTHRISQQVKVHDC 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121051g00001 188 Pfam Protein kinase domain 66 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121051g00001 188 PANTHER OS07G0107800 PROTEIN-RELATED 57 171 - -
Stsc121051g00001 188 ProSitePatterns Serine/Threonine protein kinases active-site signature. 88 100 IPR008271 GO:0004672|GO:0006468
Stsc121051g00001 188 SUPERFAMILY Protein kinase-like (PK-like) 59 175 IPR011009 -
Stsc121051g00001 188 ProSiteProfiles Protein kinase domain profile. 1 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121051g00001 188 Gene3D Transferase(Phosphotransferase) domain 1 51 187 - -
Stsc121051g00001 188 SMART serkin_6 4 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121051g00001 Stsc-Chr121051 2033 3577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121051g00001 58 177 Receptor kinase-like Gene Family AT1G51880 67.500 5.59e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc121051g00001 Pkinase 8.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121051g00001 - - aip:107614772 234.572