Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121050g00005 ATGGAGTGCAGGAGCATCCAAAGCATGGCATTGAATGGCACAACACCACCCAAATATGATGTGTTTGTGAGCTTCAGAGGTGAGGACGTACGCAACACTTTCGCTGATCATCTCTTTGCTGCTTTTCGTAGAAATGGAATTGTTGCATTCAGGGATGATAGGAATCTCATGCAAGGACATCACATCTCCACTGAGCTAGTTCAAGCAATTGAAGGATCTCAGGTTCTGATTGTGATCTTCTCCAAGAACTATGCTACTTCTTCATGGTGCTTGCAGGAACTCGCTAAGATGCTAGATTGCAGCACTAAGGTAACTGTACCAAATTTGCTGCCTATTTTCTATCATGTAAGTCCCTCTGAGGTGCGTAAACAGACTGGAGACTATGGGAAAGCTTTGGATGAACATGAAGAAAGATTCAAACATGATGCAGAGATGGTGCAACAATGGAGGGGAGCTCTGGTGCAAGTGGCTGGTCTCTCTGGTTGGCATATACAAAATAAGCAAGAGAATGAAGAGATTGAAAAAATTGTTAAAACGGTTAGAAGCAAATTAAGTTGCAACTTGTTAAGTGTAGATGGGTTGGTTGGGATGCAATCTCGTGTACAACAATTGGAAAACCTTATTGATTTTAACTCCAATGACGATGTTCGAGTGGTAGGCGTTTGTGGGATGGGTGGGATAGGAAAGTCAACTCTTGCTAGGGTGCTGTACGGTAGAAACCTTCATCAATATGGCGCTCATTGCTTTGTTGATGATATAAGCAAAGCTTTTCAGGAAAGTGGTCTACTTTCCCTACAAAAACAGCTTATTTGCCAACTTACACGAGGAGAAACCTTAGATATATTCAATCGTTACGAGGCTGATAATTTGATAAAAGCTTTGTTTTGCCCTCGAAAATCTCTGATTGTTTTAGATAATGTTGATGAAGCTGAACAATTACAGAAGTTAGGTGTGACTCGTGATTGTCTTTGTCCAGGAAGTAGACTTGTTGTAATTTCTAGAGATCAACACATCTTGAACTCTTTTGGAATAAATGAAATATACAACGTCCAACTCTTGAATGAGGATGAAGCTCATCAAATGTTCTGCAGAAAAGCTTTTAAAGAAAATATAATTATGAGTTCTGAGGACATTAGCAGAGAGTATATAGAGTTGACAGATCTTGCACTAGAATATACTCAAGGTCTTCCCTTGGCAATCCAAGTTTTGGGGTCATTTCTATGCGGTCGAAATATCTCTGAATGGAAAAGTGCCTTAGCTAGATTAAGAGATAATCCAATGAGAGAAATTTTGGATGTGCTTCAAATTAGTTTTAATGGATTGGAACCCCTCGAAAAAGAACTATTTTTGGATATTGCTTGTTTCTTTAACCACAAAAGAAAAGACTATGTAGCAAAAGTGTCGAAATATCGCGGTCTTTATCCAAAGATTGGAATAAGGGTCCTTGTTGATAAATCATTAATAACCATAGATGGTGATAACAAGATTGGAATGCATGACCTGTTGCAAGAGTTAGGGATGAAATTGTTCGGCAAAGTGCGCCAAACGAGCCATGGAAGTGGAGTAGGATATGGCGCAAAGAGGATTTTCTAA 1593 0.3942 MECRSIQSMALNGTTPPKYDVFVSFRGEDVRNTFADHLFAAFRRNGIVAFRDDRNLMQGHHISTELVQAIEGSQVLIVIFSKNYATSSWCLQELAKMLDCSTKVTVPNLLPIFYHVSPSEVRKQTGDYGKALDEHEERFKHDAEMVQQWRGALVQVAGLSGWHIQNKQENEEIEKIVKTVRSKLSCNLLSVDGLVGMQSRVQQLENLIDFNSNDDVRVVGVCGMGGIGKSTLARVLYGRNLHQYGAHCFVDDISKAFQESGLLSLQKQLICQLTRGETLDIFNRYEADNLIKALFCPRKSLIVLDNVDEAEQLQKLGVTRDCLCPGSRLVVISRDQHILNSFGINEIYNVQLLNEDEAHQMFCRKAFKENIIMSSEDISREYIELTDLALEYTQGLPLAIQVLGSFLCGRNISEWKSALARLRDNPMREILDVLQISFNGLEPLEKELFLDIACFFNHKRKDYVAKVSKYRGLYPKIGIRVLVDKSLITIDGDNKIGMHDLLQELGMKLFGKVRQTSHGSGVGYGAKRIF 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121050g00005 530 Gene3D - 17 187 IPR035897 -
Stsc121050g00005 530 Pfam TIR domain 18 183 IPR000157 GO:0007165
Stsc121050g00005 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 452 IPR027417 -
Stsc121050g00005 530 Gene3D - 352 442 IPR042197 -
Stsc121050g00005 530 PRINTS Disease resistance protein signature 294 308 - -
Stsc121050g00005 530 PRINTS Disease resistance protein signature 218 233 - -
Stsc121050g00005 530 PRINTS Disease resistance protein signature 393 407 - -
Stsc121050g00005 530 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 162 IPR035897 -
Stsc121050g00005 530 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 508 IPR044974 GO:0006952
Stsc121050g00005 530 Gene3D - 188 346 IPR027417 -
Stsc121050g00005 530 Pfam NB-ARC domain 204 428 IPR002182 GO:0043531
Stsc121050g00005 530 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 186 - -
Stsc121050g00005 530 SUPERFAMILY "Winged helix" DNA-binding domain 429 510 IPR036390 -
Stsc121050g00005 530 ProSiteProfiles TIR domain profile. 17 184 IPR000157 GO:0007165
Stsc121050g00005 530 SMART till_3 18 159 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121050g00005 Stsc-Chr121050 35344 37232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121050g00005 195 520 WRKY Transcription Factor Family AT5G45050 31.915 2.20e-46 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121050g00005 - - ahf:112792657 781.171